myRT

myRT report for GCA_902790725.1_Rumen_uncultured_genome_RUG13598

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Seq: CADATC010000024.1 uncultured Clostridiales bacterium isolate RUG13598 genome assembly, contig: RUG13598_asm_24, whole genome shotgun sequence (27963 bp)
Overview 1 RT 1: 24162-27587 bp Neighborhood of RT #1 [24162, 27670] PckA HTH_ASNC RVT-GII GIIM Feature: gene Location: 24162-25838 bp Feature: domain Description: PckA Location: 24264-25830 bp Feature: domain Description: PckA Location: 24264-25830 bp Feature: gene Location: 25943-26371 bp Feature: domain Description: HTH_ASNC Location: 25955-26270 bp Feature: domain Description: HTH_ASNC Location: 25955-26270 bp Feature: gene Location: 26480-27670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26684-27299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26684-27299 bp Feature: domain Description: GIIM Note: maturase Location: 27356-27587 bp Feature: domain Description: GIIM Note: maturase Location: 27356-27587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PckA (COG1866), HTH_ASNC (smart00344), RVT-GII, GIIM (pfam08388)

Seq: CADATC010000054.1 uncultured Clostridiales bacterium isolate RUG13598 genome assembly, contig: RUG13598_asm_54, whole genome shotgun sequence (9608 bp)
Overview 1 RT 1: 242-2704 bp Neighborhood of RT #1 [242, 2721] RVT-GII KOG4768 smpB sigpep_I_bact Feature: gene Location: 242-1483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1061 bp Feature: domain Description: KOG4768 Location: 1172-1283 bp Feature: domain Description: KOG4768 Location: 1172 -12 83 bp Feature: gene Location: 1602-2081 bp Feature: domain Description: smpB Location: 1623-2064 bp Feature: domain Description: smpB Location: 162 3-2 064 bp Feature: gene Location: 2104-2721 bp Feature: domain Description: sigpep_I_bact Location: 2254-2704 bp Feature: domain Description: sigpep_I_bact Location: 2 2 54-2 704 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT smpB (TIGR00086), sigpep_I_bact (TIGR02227), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: CADATC010000060.1 uncultured Clostridiales bacterium isolate RUG13598 genome assembly, contig: RUG13598_asm_60, whole genome shotgun sequence (7636 bp)
Overview 1 RT 1: 1-2998 bp Neighborhood of RT #1 [1, 2998] RVT-GII AIM24 Feature: gene Location: 1-852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205-820 bp Feature: gene Location: 1480-2154 bp Feature: domain Description: AIM24 Location: 1483-2134 bp Feature: domain Description: AIM24 Location: 1483 -213 4 bp Feature: gene Location: 2255-2998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIM24 (pfam01987), RVT-GII