myRT

myRT report for GCA_902791355.1_Rumen_uncultured_genome_RUG13657

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Seq: CADAVK010000030.1 uncultured Bacteroidetes bacterium isolate RUG13657 genome assembly, contig: RUG13657_asm_30, whole genome shotgun sequence (15942 bp)
Overview 1 RT 1: 3-4502 bp Neighborhood of RT #1 [3, 4502] AAAA RVT-GII GIIM Feature: gene Location: 3-1100 bp Feature: domain Description: AAAA Location: 9-870 bp Feature: domain Description: AAAA Location: 9-870 bp Feature: gene Location: 1218-2597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1533-2148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 533-21 48 bp Feature: domain Description: GIIM Note: maturase Location: 2205-2427 bp Feature: domain Description: GIIM Note: maturase Location: 2205-2427 bp Feature: gene Location: 3011-3367 bp Feature: gene Location: 3492-4502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAAA (COG1672), RVT-GII, GIIM (pfam08388)

Seq: CADAVK010000074.1 uncultured Bacteroidetes bacterium isolate RUG13657 genome assembly, contig: RUG13657_asm_74, whole genome shotgun sequence (16165 bp)
Overview 1 RT 1: 6929-10274 bp Neighborhood of RT #1 [6929, 10274] RVT-AbiP2 INT_ICEBs1_C_like Feature: gene Location: 6929-7063 bp Feature: gene Location: 7459-7611 bp Feature: gene Location: 7702-9207 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 8128-8584 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 812 8-8584 bp Feature: gene Location: 9313-9768 bp Feature: domain Description: INT_ICEBs1_C_like Location: 9319-9712 bp Feature: domain Description: INT_ICEBs1_C_like Location: 9319-9712 bp Feature: gene Location: 10080-10274 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, INT_ICEBs1_C_like (cd01189)

Seq: CADAVK010000121.1 uncultured Bacteroidetes bacterium isolate RUG13657 genome assembly, contig: RUG13657_asm_121, whole genome shotgun sequence (8411 bp)
Overview 1 RT 1: 5278-7522 bp Neighborhood of RT #1 [5278, 7950] RVT-Retrons Feature: gene Location: 5278-5424 bp Feature: gene Location: 5746-6624 bp Feature: gene Location: 6799-7950 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6955-7522 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6955-7522 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CADAVK010000144.1 uncultured Bacteroidetes bacterium isolate RUG13657 genome assembly, contig: RUG13657_asm_144, whole genome shotgun sequence (8602 bp)
Overview 1 RT 1: 3349-8518 bp Neighborhood of RT #1 [3349, 8518] QueC TatD RVT-UG5 DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 3349-4647 bp Feature: domain Description: QueC Location: 3772-4444 bp Feature: domain Description: QueC Location: 3772-4 4 4 4 bp Feature: gene Location: 4640-5374 bp Feature: domain Description: TatD Location: 4655-5360 bp Feature: domain Description: TatD Location: 4 655-5360 bp Feature: gene Location: 5536-6378 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5992-6355 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 5992-6355 bp Feature: gene Location: 6522-7739 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 6585-7053 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 6585-7053 bp Feature: domain Description: Transposase_20 Location: 7371-7623 bp Feature: domain Description: Transposase_20 Location: 7371-7623 bp Feature: gene Location: 7994-8518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QueC (pfam06508), TatD (COG0084), RVT-UG5, DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371)

Seq: CADAVK010000463.1 uncultured Bacteroidetes bacterium isolate RUG13657 genome assembly, contig: RUG13657_asm_463, whole genome shotgun sequence (2655 bp)
Overview 1 RT 1: 141-2583 bp Neighborhood of RT #1 [141, 2654] DNA_binding_1 protocat_pcaD RVT-GII GIIM Feature: gene Location: 141-617 bp Feature: domain Description: DNA_binding_1 Location: 291-540 bp Feature: domain Description: DNA_binding_1 Location: 291-5 40 bp Feature: gene Location: 737-1720 bp Feature: domain Description: protocat_pcaD Location: 896-1268 bp Feature: domain Description: protocat_pcaD Location: 896-1268 bp Feature: gene Location: 1830-2654 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1833-2304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1833-2304 bp Feature: domain Description: GIIM Note: maturase Location: 2364-2583 bp Feature: domain Description: GIIM Note: maturase Location: 2364-25 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_binding_1 (pfam01035), protocat_pcaD (TIGR02427), RVT-GII, GIIM (pfam08388)

Seq: CADAVK010000569.1 uncultured Bacteroidetes bacterium isolate RUG13657 genome assembly, contig: RUG13657_asm_569, whole genome shotgun sequence (2233 bp)
Overview 1 RT 1: 2-2231 bp Neighborhood of RT #1 [2, 2231] RVT-UG26 Feature: gene Location: 2-568 bp Feature: gene Location: 558-1790 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 741-1356 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 741-1356 bp Feature: gene Location: 1953-2231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG26