myRT

myRT report for GCA_902793475.1_Rumen_uncultured_genome_RUG13871

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Seq: CADBDP010000001.1 uncultured Lachnospiraceae bacterium isolate RUG13871 genome assembly, contig: RUG13871_asm_1, whole genome shotgun sequence (155453 bp)
Overview 1 RT 1: 150233-155091 bp Neighborhood of RT #1 [150233, 155120] DPM1_like_bac GtrA GtrA RVT-GII GIIM PBP2_TMBP_like Feature: gene Location: 150233-151231 bp Feature: domain Description: DPM1_like_bac Location: 150251-150794 bp Feature: domain Description: DPM1 _like_bac Location: 1 50251 -1 50794 bp Feature: gene Location: 151224-151748 bp Feature: domain Description: GtrA Location: 151263-151554 bp Feature: domain Description: GtrA Location: 1 51 263-1 51 554 bp Feature: domain Description: GtrA Location: 151641-151743 bp Feature: domain Description: GtrA Location: 1 51 641 -1 51 743 bp Feature: gene Location: 151812-152711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 151821-152253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 821 -1 52253 bp Feature: domain Description: GIIM Note: maturase Location: 152313-152541 bp Feature: domain Description: GIIM Note: maturase Location: 1 5231 3-1 52541 bp Feature: gene Location: 152844-155120 bp Feature: domain Description: PBP2_TMBP_like Location: 153993-155091 bp Feature: domain Description: PBP2_TMBP_like Location: 1 53993-1 55091 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DPM1_like_bac (cd04187), GtrA (pfam04138), RVT-GII, GIIM (pfam08388), PBP2_TMBP_like (cd13585)

Seq: CADBDP010000006.1 uncultured Lachnospiraceae bacterium isolate RUG13871 genome assembly, contig: RUG13871_asm_6, whole genome shotgun sequence (70506 bp)
Overview 1 RT 1: 47165-52994 bp Neighborhood of RT #1 [47165, 53059] Uup ABC_tran_CTD RVT-UG26 PTS-II-ABC-beta CcmA Feature: gene Location: 47165-49012 bp Feature: domain Description: Uup Location: 47168-48650 bp Feature: domain Description: Uup Location: 47168-48650 bp Feature: domain Description: ABC_tran_CTD Location: 48773-48968 bp Feature: domain Description: ABC_tran_CTD Location: 48773-48968 bp Feature: gene Location: 49102-49665 bp Feature: gene Location: 49755-51128 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 50097-50730 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 50097-50730 bp Feature: gene Location: 51125-52222 bp Feature: domain Description: PTS-II-ABC-beta Location: 51140-52196 bp Feature: domain Description: PTS-II-ABC-beta Location: 51140-52 196 bp Feature: gene Location: 52229-53059 bp Feature: domain Description: CcmA Location: 52325-52994 bp Feature: domain Description: CcmA Location: 52 32 5-52 994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Uup (COG0488), ABC_tran_CTD (pfam16326), RVT-UG26, PTS-II-ABC-beta (TIGR01995), CcmA (COG4133)