myRT

myRT report for GCA_902793905.1_Rumen_uncultured_genome_RUG13921

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Seq: CADBFK010000023.1 uncultured Prevotellaceae bacterium isolate RUG13921 genome assembly, contig: RUG13921_asm_23, whole genome shotgun sequence (37279 bp)
Overview 1 RT 1: 329-6171 bp Neighborhood of RT #1 [329, 6227] YejR RVT-GII GIIM OafA PqqL Feature: gene Location: 329-1657 bp Feature: domain Description: YejR Location: 347-1646 bp Feature: domain Description: YejR Location: 347-1 646 bp Feature: gene Location: 1901-2161 bp Feature: gene Location: 2158-3570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2500-3115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2500-31 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 3172-3376 bp Feature: domain Description: GIIM Note: maturase Location: 31 72-3376 bp Feature: gene Location: 3712-4707 bp Feature: domain Description: OafA Location: 3775-4642 bp Feature: domain Description: OafA Location: 3775-4642 bp Feature: gene Location: 4989-6227 bp Feature: domain Description: PqqL Location: 4998-6171 bp Feature: domain Description: PqqL Location: 4998-61 71 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YejR (COG0523), RVT-GII, GIIM (pfam08388), OafA (COG1835), PqqL (COG0612)

Seq: CADBFK010000052.1 uncultured Prevotellaceae bacterium isolate RUG13921 genome assembly, contig: RUG13921_asm_52, whole genome shotgun sequence (20805 bp)
Overview 1 RT 1: 13329-17724 bp Neighborhood of RT #1 [13329, 17930] DUF1016_N YhcG_C RVT-UNC SusD Feature: gene Location: 13329-14369 bp Feature: domain Description: DUF1016_N Location: 13386-13788 bp Feature: domain Description: DUF1016_N Location: 13386-13788 bp Feature: domain Description: YhcG_C Location: 13863-14322 bp Feature: domain Description: YhcG_C Location: 13863-1432 2 bp Feature: gene Location: 14709-14981 bp Feature: gene Location: 15223-15441 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15352-15430 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 15352 -15430 bp Feature: gene Location: 15458-16273 bp Feature: gene Location: 16284-17930 bp Feature: domain Description: SusD Location: 16422-17724 bp Feature: domain Description: SusD Location: 1642 2 -1772 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1016_N (pfam17761), YhcG_C, RVT-CRISPR/RVT-UG7/RVT-GII(RVT-UNC), SusD (NF033071)

Seq: CADBFK010000085.1 uncultured Prevotellaceae bacterium isolate RUG13921 genome assembly, contig: RUG13921_asm_85, whole genome shotgun sequence (16088 bp)
Overview 1 RT 1: 4115-9944 bp Neighborhood of RT #1 [4115, 9952] SusD 2-Hacid_dh_4 RVT-Retrons kpsF PRK05198 Feature: gene Location: 4115-5455 bp Feature: domain Description: SusD Location: 4442-5390 bp Feature: domain Description: SusD Location: 4442-53 90 bp Feature: gene Location: 5519-6487 bp Feature: domain Description: 2-Hacid_dh_4 Location: 5546-6455 bp Feature: domain Description: 2-Hacid_dh_4 Location: 5546-6455 bp Feature: gene Location: 6748-8178 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7012-7594 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7012-7594 bp Feature: gene Location: 8233-9183 bp Feature: domain Description: kpsF Location: 8359-9160 bp Feature: domain Description: kpsF Location: 83 59-9160 bp Feature: gene Location: 9191-9952 bp Feature: domain Description: PRK05198 Location: 9200-9944 bp Feature: domain Description: PRK05198 Location: 9200-9944 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), 2-Hacid_dh_4 (cd12162), RVT-Retrons, kpsF (TIGR00393), PRK05198 (2-dehydro-3-deoxyphosphooctonate aldolase; Provisional)

Seq: CADBFK010000197.1 uncultured Prevotellaceae bacterium isolate RUG13921 genome assembly, contig: RUG13921_asm_197, whole genome shotgun sequence (4344 bp)
Overview 1 RT 1: 640-4343 bp Neighborhood of RT #1 [640, 4343] PRK13525 DUF4369 TlpA_like_family RVT-Retrons Feature: gene Location: 640-1242 bp Feature: domain Description: PRK13525 Location: 646-1237 bp Feature: domain Description: PRK13525 Location: 64 6-1237 bp Feature: gene Location: 1536-2543 bp Feature: domain Description: DUF4369 Location: 1614-1881 bp Feature: domain Description: DUF4 369 Location: 1614 -1881 bp Feature: domain Description: TlpA_like_family Location: 2148-2496 bp Feature: domain Description: TlpA_like_family Location: 214 8-24 96 bp Feature: gene Location: 3126-3977 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3291-3810 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3291-3810 bp Feature: gene Location: 4137-4343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13525 (pyridoxal 5'-phosphate synthase glutaminase subunit PdxT), DUF4369 (pfam14289), TlpA_like_family (cd02966), RVT-Retrons

Seq: CADBFK010000205.1 uncultured Prevotellaceae bacterium isolate RUG13921 genome assembly, contig: RUG13921_asm_205, whole genome shotgun sequence (4172 bp)
Overview 1 RT 1: 1550-4171 bp Neighborhood of RT #1 [1550, 4171] RVT-DGRs Feature: gene Location: 1550-1828 bp Feature: gene Location: 1984-2484 bp Feature: gene Location: 2471-3775 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2684-3281 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2684-3281 bp Feature: gene Location: 3908-4171 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs