myRT

myRT report for GCA_902794445.1_Rumen_uncultured_genome_RUG13972

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Seq: CADBHT010000060.1 uncultured Prevotellaceae bacterium isolate RUG13972 genome assembly, contig: RUG13972_asm_60, whole genome shotgun sequence (19717 bp)
Overview 1 RT 1: 219-3280 bp Neighborhood of RT #1 [219, 3288] RVT-Retrons RVT-Retrons PRK05198 Feature: gene Location: 219-2189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 483-708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 483-708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 714-1002 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 71 4-1 002 bp Feature: gene Location: 2302-2472 bp Feature: gene Location: 2527-3288 bp Feature: domain Description: PRK05198 Location: 2536-3280 bp Feature: domain Description: PRK051 98 Location: 2536-3280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK05198 (2-dehydro-3-deoxyphosphooctonate aldolase; Provisional)

Seq: CADBHT010000132.1 uncultured Prevotellaceae bacterium isolate RUG13972 genome assembly, contig: RUG13972_asm_132, whole genome shotgun sequence (7157 bp)
Overview 1 RT 1: 3-6142 bp Neighborhood of RT #1 [3, 6144] PqqL YotD YotD RVT-GII GIIM TlpA_like_family DUF2149 Feature: gene Location: 3-611 bp Feature: domain Description: PqqL Location: 81-501 bp Feature: domain Description: PqqL Location: 81-501 bp Feature: gene Location: 838-1491 bp Feature: domain Description: YotD Location: 847-943 bp Feature: domain Description: YotD Location: 847-943 bp Feature: domain Description: YotD Location: 976-1471 bp Feature: domain Description: YotD Location: 976-1471 bp Feature: gene Location: 2010-3416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352-2970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 352 -2 970 bp Feature: domain Description: GIIM Note: maturase Location: 3024-3228 bp Feature: domain Description: GIIM Note: maturase Location: 302 4-32 2 8 bp Feature: gene Location: 3764-5728 bp Feature: domain Description: TlpA_like_family Location: 5360-5660 bp Feature: domain Description: TlpA_like_family Location: 5360-5660 bp Feature: gene Location: 5818-6144 bp Feature: domain Description: DUF2149 Location: 5863-6142 bp Feature: domain Description: DUF2 149 Location: 5863-6142 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PqqL (COG0612), DUF2149 (pfam09919)

Seq: CADBHT010000197.1 uncultured Prevotellaceae bacterium isolate RUG13972 genome assembly, contig: RUG13972_asm_197, whole genome shotgun sequence (5201 bp)
Overview 1 RT 1: 1-3126 bp Neighborhood of RT #1 [1, 3191] RVT-Retrons 2-Hacid_dh_4 SusD SusD Feature: gene Location: 1-492 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 268-490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 268-490 bp Feature: gene Location: 765-1727 bp Feature: domain Description: 2-Hacid_dh_4 Location: 774-1695 bp Feature: domain Description: 2-Hacid_dh_4 Location: 774-1695 bp Feature: gene Location: 1851-3191 bp Feature: domain Description: SusD Location: 2172-2280 bp Feature: domain Description: SusD Location: 2172-2280 bp Feature: domain Description: SusD Location: 2319-3126 bp Feature: domain Description: SusD Location: 23 19-3 126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, SusD (NF033071), 2-Hacid_dh_4 (cd12162)