myRT

myRT report for GCA_902794525.1_Rumen_uncultured_genome_RUG13980

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Seq: CADBHL010000036.1 uncultured Prevotellaceae bacterium isolate RUG13980 genome assembly, contig: RUG13980_asm_36, whole genome shotgun sequence (25298 bp)
Overview 1 RT 1: 20023-25293 bp Neighborhood of RT #1 [20023, 25293] LRR_5 RVT-GII Feature: gene Location: 20023-23460 bp Feature: domain Description: LRR_5 Location: 21691-21838 bp Feature: domain Description: LRR_5 Location: 21 691 -21 838 bp Feature: gene Location: 24078-24368 bp Feature: gene Location: 24379-25026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24580-24937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24580-24937 bp Feature: gene Location: 25027-25293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_5 (pfam13306), RVT-GII

Seq: CADBHL010000052.1 uncultured Prevotellaceae bacterium isolate RUG13980 genome assembly, contig: RUG13980_asm_52, whole genome shotgun sequence (9712 bp)
Overview 1 RT 1: 783-8338 bp Neighborhood of RT #1 [783, 8823] KOG3785 CHAT RVT-AbiP2 DUF772 HTH_7 COG4584 Feature: gene Location: 783-2012 bp Feature: gene Location: 2043-4661 bp Feature: domain Description: KOG3785 Location: 2262-2433 bp Feature: domain Description: KOG3785 Location: 2 2 62 -2 433 bp Feature: domain Description: CHAT Location: 3789-4653 bp Feature: domain Description: CHAT Location: 3789-4653 bp Feature: gene Location: 4725-6362 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5148-5607 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 5148-5607 bp Feature: gene Location: 6691-7179 bp Feature: domain Description: DUF772 Location: 6880-7069 bp Feature: domain Description: DUF772 Location: 6880-7069 bp Feature: gene Location: 7432-8823 bp Feature: domain Description: HTH_7 Location: 7450-7561 bp Feature: domain Description: HTH_7 Location: 7450-7561 bp Feature: domain Description: COG4584 Location: 7696-8338 bp Feature: domain Description: COG4584 Location: 7696-8338 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG3785 (KOG3785, Uncharacterized conserved protein ), CHAT (pfam12770), RVT-AbiP2, DUF772 (pfam05598), HTH_7 (pfam02796), COG4584 (Transposase )

Seq: CADBHL010000055.1 uncultured Prevotellaceae bacterium isolate RUG13980 genome assembly, contig: RUG13980_asm_55, whole genome shotgun sequence (3270 bp)
Overview 1 RT 1: 2-3204 bp Neighborhood of RT #1 [2, 3269] RVT-GII VirD4 Feature: gene Location: 2-145 bp Feature: gene Location: 242-2119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560-1301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 560-13 01 bp Feature: gene Location: 2271-2591 bp Feature: gene Location: 2736-3269 bp Feature: domain Description: VirD4 Location: 2832-3204 bp Feature: domain Description: VirD4 Location: 283 2-3 204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, VirD4 (COG3505)