myRT

myRT report for GCA_902794725.1_Rumen_uncultured_genome_RUG13998

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Seq: CADBIM010000003.1 uncultured Prevotellaceae bacterium isolate RUG13998 genome assembly, contig: RUG13998_asm_3, whole genome shotgun sequence (58448 bp)
Overview 1 RT 1: 336-4610 bp Neighborhood of RT #1 [336, 4615] GH27 Melibiase_C CBM35_galactosidase-like RVT-GII GIIM RpoD RpoD YotD Rubrerythrin_like Feature: gene Location: 336-2000 bp Feature: domain Description: GH27 Location: 489-1308 bp Feature: domain Description: GH27 Location: 489-1 308 bp Feature: domain Description: Melibiase_C Location: 1389-1569 bp Feature: domain Description: Melibiase_C Location: 1 389-1 569 bp Feature: domain Description: CBM35_galactosidase-like Location: 1602-1986 bp Feature: domain Description: CBM35_galactosidase-like Location: 1 602-1 986 bp Feature: gene Location: 2122-2454 bp Feature: gene Location: 2333-3115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339-2669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2339-2669 bp Feature: domain Description: GIIM Note: maturase Location: 2723-2933 bp Feature: domain Description: GIIM Note: maturase Location: 2723-2933 bp Feature: gene Location: 3183-3800 bp Feature: domain Description: RpoD Location: 3201-3438 bp Feature: domain Description: RpoD Location: 3201 -3438 bp Feature: domain Description: RpoD Location: 3447-3792 bp Feature: domain Description: RpoD Location: 3447-3792 bp Feature: gene Location: 4055-4615 bp Feature: domain Description: YotD Location: 4064-4163 bp Feature: domain Description: YotD Location: 4064-41 63 bp Feature: domain Description: Rubrerythrin_like Location: 4247-4610 bp Feature: domain Description: Rubrerythrin_like Location: 4247-461 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RpoD (COG0568), GH27 (cd14792), Melibiase_C (pfam17801), CBM35_galactosidase-like (cd04081)

Seq: CADBIM010000009.1 uncultured Prevotellaceae bacterium isolate RUG13998 genome assembly, contig: RUG13998_asm_9, whole genome shotgun sequence (44592 bp)
Overview 1 RT 1: 19154-22169 bp Neighborhood of RT #1 [19154, 22192] DUF4376 RVT-DGRs RVT-DGRs Avd_like Feature: gene Location: 19154-19678 bp Feature: gene Location: 19793-20389 bp Feature: domain Description: DUF4376 Location: 20048-20342 bp Feature: domain Description: DUF4376 Location: 2 0048-2 0342 bp Feature: gene Location: 20398-21135 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20404-20875 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 0404-2 0875 bp Feature: gene Location: 21145-21555 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21331-21553 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 1331-2 1553 bp Feature: gene Location: 21663-21824 bp Feature: gene Location: 21836-22192 bp Feature: domain Description: Avd_like Location: 21860-22169 bp Feature: domain Description: Avd_like Location: 2 1860-2 2 169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4376 (pfam14301), RVT-DGRs, Avd_like (cd16376)

Seq: CADBIM010000215.1 uncultured Prevotellaceae bacterium isolate RUG13998 genome assembly, contig: RUG13998_asm_215, whole genome shotgun sequence (3108 bp)
Overview 1 RT 1: 389-3103 bp Neighborhood of RT #1 [389, 3105] RVT-GII Intron_maturas2 MPTase-PolyVal Feature: gene Location: 389-646 bp Feature: gene Location: 704-2530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 968-1790 bp Feature: domain Description: Intron_maturas2 Location: 1925-2201 bp Feature: domain Description: Intron_maturas2 Location: 1925-2201 bp Feature: gene Location: 2683-3105 bp Feature: domain Description: MPTase-PolyVal Location: 2779-3103 bp Feature: domain Description: MPTase-PolyVal Location: 2779-3 103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348)