myRT

myRT report for GCA_902796445.1_Rumen_uncultured_genome_RUG14178

Download annotations/find similar RTs

Seq: CADBPJ010000070.1 uncultured Ruminococcus sp. isolate RUG14178 genome assembly, contig: RUG14178_asm_70, whole genome shotgun sequence (5463 bp)
Overview 1 RT 1: 2000-5462 bp Neighborhood of RT #1 [2000, 5462] TrbC VirD4 RVT-GII Intron_maturas2 Feature: gene Location: 2000-2338 bp Feature: domain Description: TrbC Location: 2048-2333 bp Feature: domain Description: TrbC Location: 2048-2333 bp Feature: gene Location: 2268-2861 bp Feature: domain Description: VirD4 Location: 2271-2628 bp Feature: domain Description: VirD4 Location: 2271 -2628 bp Feature: gene Location: 3058-4869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-4150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3322-41 50 bp Feature: domain Description: Intron_maturas2 Location: 4222-4546 bp Feature: domain Description: Intron_maturas2 Location: 4222-4546 bp Feature: gene Location: 5280-5462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbC (pfam04956), VirD4 (COG3505), RVT-GII, Intron_maturas2 (pfam01348)

Seq: CADBPJ010000245.1 uncultured Ruminococcus sp. isolate RUG14178 genome assembly, contig: RUG14178_asm_245, whole genome shotgun sequence (17961 bp)
Overview 1 RT 1: 2753-13928 bp Neighborhood of RT #1 [2753, 14329] DUF3848 KOG1000 RVT-GII Intron_maturas2 HNHc MutS_I YtxK COG4646 Feature: gene Location: 2753-3109 bp Feature: domain Description: DUF3848 Location: 2777-3053 bp Feature: domain Description: DUF3848 Location: 2 777-3053 bp Feature: gene Location: 3112-4071 bp Feature: domain Description: KOG1000 Location: 3139-3352 bp Feature: domain Description: KOG1000 Location: 3139-3352 bp Feature: gene Location: 4152-5966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4416-5235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4416-52 35 bp Feature: domain Description: Intron_maturas2 Location: 5331-5634 bp Feature: domain Description: Intron_maturas2 Location: 5331-5634 bp Feature: domain Description: HNHc Note: nucleases Location: 5787-5937 bp Feature: domain Description: HNHc Note: nucleases Location: 5787-5937 bp Feature: gene Location: 6068-6199 bp Feature: gene Location: 6554-14329 bp Feature: domain Description: MutS_I Location: 9824-10052 bp Feature: domain Description: MutS_I Location: 982 4-10052 bp Feature: domain Description: YtxK Location: 10559-11285 bp Feature: domain Description: YtxK Location: 10559-112 85 bp Feature: domain Description: COG4646 Location: 11357-13928 bp Feature: domain Description: COG4646 Location: 11357-1392 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3848 (pfam12959), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), MutS_I (pfam01624), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )