myRT

myRT report for GCA_902796695.1_Rumen_uncultured_genome_RUG14193

Download annotations/find similar RTs

Seq: CADBQE010000088.1 uncultured Lachnospiraceae bacterium isolate RUG14193 genome assembly, contig: RUG14193_asm_88, whole genome shotgun sequence (10743 bp)
Overview 1 RT 1: 334-5493 bp Neighborhood of RT #1 [334, 6473] PRK13355 RVT-UG26 PRK05231 Lipase_3 Feature: gene Location: 334-1542 bp Feature: domain Description: PRK13355 Location: 340-1537 bp Feature: domain Description: PRK1 3355 Location: 340-1 537 bp Feature: gene Location: 1606-2118 bp Feature: gene Location: 2334-3542 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 2529-3147 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 2529-31 47 bp Feature: gene Location: 3953-4558 bp Feature: domain Description: PRK05231 Location: 4073-4508 bp Feature: domain Description: PRK05231 Location: 4073-4508 bp Feature: gene Location: 4599-6473 bp Feature: domain Description: Lipase_3 Location: 4914-5493 bp Feature: domain Description: Lipase_3 Location: 491 4-5493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13355 (bifunctional HTH-domain containing protein/aminotransferase; Provisional), RVT-UG26, PRK05231 (homoserine kinase; Provisional), Lipase_3 (pfam01764)

Seq: CADBQE010000226.1 uncultured Lachnospiraceae bacterium isolate RUG14193 genome assembly, contig: RUG14193_asm_226, whole genome shotgun sequence (9662 bp)
Overview 1 RT 1: 5306-9416 bp Neighborhood of RT #1 [5306, 9661] ABC_sbcCD ABC_sbcCD SbcD SbcD_C RVT-Retrons Feature: gene Location: 5306-7939 bp Feature: domain Description: ABC_sbcCD Location: 5309-6581 bp Feature: domain Description: ABC_sbcCD Location: 5309-6581 bp Feature: domain Description: ABC_sbcCD Location: 6692-7922 bp Feature: domain Description: ABC_sbcCD Location: 6692 -792 2 bp Feature: gene Location: 7936-9057 bp Feature: domain Description: SbcD Location: 7939-8698 bp Feature: domain Description: SbcD Location: 7939-8698 bp Feature: domain Description: SbcD_C Location: 8722-8983 bp Feature: domain Description: SbcD_C Location: 872 2 -8983 bp Feature: gene Location: 9239-9661 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9248-9416 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 92 48-9416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_sbcCD (cd03279), SbcD (COG0420), SbcD_C (pfam12320), RVT-Retrons