myRT

myRT report for GCA_902797595.1_Rumen_uncultured_genome_RUG14287

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Seq: CADBTN010000058.1 uncultured Ruminococcus sp. isolate RUG14287 genome assembly, contig: RUG14287_asm_58, whole genome shotgun sequence (2054 bp)
Overview 1 RT 1: 2-1019 bp Neighborhood of RT #1 [2, 2053] Desulfoferrod_N RVT-Retrons Feature: gene Location: 2-139 bp Feature: domain Description: Desulfoferrod_N Location: 50-140 bp Feature: domain Description: Desulfoferrod_N Location: 50-1 40 bp Feature: gene Location: 194-667 bp Feature: gene Location: 701-2053 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 707-1019 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 707-1 01 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Desulfoferrod_N (pfam06397), RVT-Retrons

Seq: CADBTN010000390.1 uncultured Ruminococcus sp. isolate RUG14287 genome assembly, contig: RUG14287_asm_390, whole genome shotgun sequence (6909 bp)
Overview 1 RT 1: 3-3772 bp Neighborhood of RT #1 [3, 3772] MiaB RVT-UG26 Feature: gene Location: 3-152 bp Feature: gene Location: 272-1615 bp Feature: domain Description: MiaB Location: 296-1601 bp Feature: domain Description: MiaB Location: 2 96-1601 bp Feature: gene Location: 1636-3033 bp Feature: RT Description: RVT-UG26 Note: UG26 RT Location: 1984-2611 bp Feature: RT Description: RVT-UG2 6 Note: UG2 6 RT Location: 1984-2 611 bp Feature: gene Location: 3076-3597 bp Feature: gene Location: 3632-3772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MiaB (COG0621), RVT-UG26

Seq: CADBTN010000411.1 uncultured Ruminococcus sp. isolate RUG14287 genome assembly, contig: RUG14287_asm_411, whole genome shotgun sequence (9046 bp)
Overview 1 RT 1: 1-8738 bp Neighborhood of RT #1 [1, 8812] LRR_3 LRR_5 LRR_3 LRR_3 RVT-GII NACHT KOG0274 KOG0274 KOG0274 ribokinase_group_A Feature: gene Location: 1-3855 bp Feature: domain Description: LRR_3 Location: 7-559 bp Feature: domain Description: LRR_3 Location: 7-559 bp Feature: domain Description: LRR_5 Location: 574-745 bp Feature: domain Description: LRR_5 Location: 574-745 bp Feature: domain Description: LRR_3 Location: 997-1081 bp Feature: domain Description: LRR_3 Location: 997-1081 bp Feature: domain Description: LRR_3 Location: 1186-1480 bp Feature: domain Description: LRR_3 Location: 1186-1480 bp Feature: gene Location: 4107-4325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4143-4305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4143 -43 05 bp Feature: gene Location: 4490-8326 bp Feature: domain Description: NACHT Location: 5135-5585 bp Feature: domain Description: NACHT Location: 513 5-5585 bp Feature: domain Description: KOG0274 Location: 6494-7022 bp Feature: domain Description: KOG0274 Location: 6494-7022 bp Feature: domain Description: KOG0274 Location: 7193-7646 bp Feature: domain Description: KOG0274 Location: 7193 -7646 bp Feature: domain Description: KOG0274 Location: 7646-8204 bp Feature: domain Description: KOG0274 Location: 7646-8204 bp Feature: gene Location: 8357-8812 bp Feature: domain Description: ribokinase_group_A Location: 8462-8738 bp Feature: domain Description: ribokinase_group_A Location: 8462-873 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LRR_3 (sd00036), LRR_5 (pfam13306), RVT-GII, NACHT (pfam05729), KOG0274 (KOG0274, Cdc4 and related F-box and WD-40 proteins ), ribokinase_group_A (cd01942)