myRT

myRT report for GCA_902798605.1_Rumen_uncultured_genome_RUG14387

Download annotations/find similar RTs

Seq: CADBXH010000017.1 uncultured Ruminococcus sp. isolate RUG14387 genome assembly, contig: RUG14387_asm_17, whole genome shotgun sequence (31742 bp)
Overview 1 RT 1: 250-4236 bp Neighborhood of RT #1 [250, 4236] Cas2_I_II_III RVT-UNC cas1_HMARI Feature: gene Location: 250-501 bp Feature: gene Location: 617-880 bp Feature: domain Description: Cas2_I_II_III Location: 626-836 bp Feature: domain Description: Cas2_I_II_III Location: 626-836 bp Feature: gene Location: 880-2793 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1090-1669 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1 090-1 669 bp Feature: domain Description: cas1_HMARI Location: 1807-2782 bp Feature: domain Description: cas1 _HMARI Location: 1 807-2782 bp Feature: gene Location: 3147-3461 bp Feature: gene Location: 3718-4236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR/RVT-GII/RVT-UG28(RVT-UNC), cas1_HMARI (TIGR03641)

Seq: CADBXH010000047.1 uncultured Ruminococcus sp. isolate RUG14387 genome assembly, contig: RUG14387_asm_47, whole genome shotgun sequence (12880 bp)
Overview 1 RT 1: 2-3839 bp Neighborhood of RT #1 [2, 3839] dcm RVT-UG15 Hypoth_Ymh Feature: gene Location: 2-475 bp Feature: domain Description: dcm Location: 20-473 bp Feature: domain Description: dcm Location: 2 0-473 bp Feature: gene Location: 792-2363 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1236-1629 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 12 36-162 9 bp Feature: gene Location: 2329-3141 bp Feature: domain Description: Hypoth_Ymh Location: 2749-3106 bp Feature: domain Description: Hypoth_Ymh Location: 2 749-3106 bp Feature: gene Location: 3138-3839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcm (TIGR00675), RVT-UG15, Hypoth_Ymh (pfam09509)

Seq: CADBXH010000058.1 uncultured Ruminococcus sp. isolate RUG14387 genome assembly, contig: RUG14387_asm_58, whole genome shotgun sequence (12367 bp)
Overview 1 RT 1: 9763-12365 bp Neighborhood of RT #1 [9763, 12364] QdoI QdoI Crp RVT-GII Feature: gene Location: 9763-10413 bp Feature: domain Description: QdoI Location: 9853-10021 bp Feature: domain Description: QdoI Location: 9853 -10021 bp Feature: domain Description: QdoI Location: 10180-10402 bp Feature: domain Description: QdoI Location: 10180-10402 bp Feature: gene Location: 10582-11256 bp Feature: domain Description: Crp Location: 10693-11239 bp Feature: domain Description: Crp Location: 10693 -1123 9 bp Feature: gene Location: 11747-12364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11951-12365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11951-123 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), Crp (pfam00325), RVT-GII

Seq: CADBXH010000237.1 uncultured Ruminococcus sp. isolate RUG14387 genome assembly, contig: RUG14387_asm_237, whole genome shotgun sequence (2039 bp)
Overview 1 RT 1: 1-1415 bp Neighborhood of RT #1 [1, 1486] RVT-GII GIIM FliL ocin_ocin_ocin_TIGR03798 Feature: gene Location: 1-753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -298 bp Feature: domain Description: GIIM Note: maturase Location: 352-583 bp Feature: domain Description: GIIM Note: maturase Location: 352-583 bp Feature: gene Location: 888-1133 bp Feature: domain Description: FliL Location: 984-1098 bp Feature: domain Description: FliL Location: 984 -1098 bp Feature: gene Location: 1205-1486 bp Feature: domain Description: ocin_ocin_ocin_TIGR03798 Location: 1217-1415 bp Feature: domain Description: ocin_ocin_ocin_TIGR03798 Location: 1217-14 15 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FliL (pfam03748), ocin_ocin_ocin_TIGR03798