myRT

myRT report for GCA_902798915.1_Rumen_uncultured_genome_RUG14419

Download annotations/find similar RTs

Seq: CADBYM010000007.1 uncultured Coriobacteriaceae bacterium isolate RUG14419 genome assembly, contig: RUG14419_asm_7, whole genome shotgun sequence (138829 bp)
Overview 1 RT 1: 118893-124743 bp Neighborhood of RT #1 [118893, 124910] VOC_like RVT-GII GIIM MATE_like_4 COG1373 Feature: gene Location: 118893-119324 bp Feature: domain Description: VOC_like Location: 118911-119280 bp Feature: domain Description: VOC_like Location: 1 1 891 1 -1 1 9280 bp Feature: gene Location: 119644-119856 bp Feature: gene Location: 120085-121509 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 120442-121063 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 20442-1 21 063 bp Feature: domain Description: GIIM Note: maturase Location: 121120-121336 bp Feature: domain Description: GIIM Note: maturase Location: 1 21 1 20-1 21 336 bp Feature: gene Location: 121784-123109 bp Feature: domain Description: MATE_like_4 Location: 121808-123059 bp Feature: domain Description: MATE_like_4 Location: 1 21 808-1 23059 bp Feature: gene Location: 123654-124910 bp Feature: domain Description: COG1373 Location: 123684-124743 bp Feature: domain Description: COG1 373 Location: 1 23684-1 24743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VOC_like (cd16355), RVT-GII, GIIM (pfam08388), MATE_like_4 (cd13144), COG1373 (Predicted ATPase, AAA+ superfamily )

Seq: CADBYM010000019.1 uncultured Coriobacteriaceae bacterium isolate RUG14419 genome assembly, contig: RUG14419_asm_19, whole genome shotgun sequence (54791 bp)
Overview 1 RT 1: 21021-26487 bp Neighborhood of RT #1 [21021, 26487] DUF4230 Csx1_III-U RVT-CRISPR cas1_HMARI Feature: gene Location: 21021-21632 bp Feature: domain Description: DUF4230 Location: 21162-21588 bp Feature: domain Description: DUF42 30 Location: 2 1162 -2 1588 bp Feature: gene Location: 21735-23531 bp Feature: domain Description: Csx1_III-U Location: 22248-22734 bp Feature: domain Description: Csx1_III-U Location: 2 2 2 48-2 2 734 bp Feature: gene Location: 23798-25702 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 24008-24584 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 4008-2 4584 bp Feature: domain Description: cas1_HMARI Location: 24722-25694 bp Feature: domain Description: cas1_HMARI Location: 2 472 2 -2 5694 bp Feature: gene Location: 26323-26487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4230 (pfam14014), Csx1_III-U (cl21570), RVT-CRISPR, cas1_HMARI (TIGR03641)

Seq: CADBYM010000067.1 uncultured Coriobacteriaceae bacterium isolate RUG14419 genome assembly, contig: RUG14419_asm_67, whole genome shotgun sequence (12644 bp)
Overview 1 RT 1: 280-7970 bp Neighborhood of RT #1 [280, 8023] Avd_like RVT-DGRs CARDB CARDB ATC_hydrolase Feature: gene Location: 280-843 bp Feature: domain Description: Avd_like Location: 289-439 bp Feature: domain Description: Avd_like Location: 289-43 9 bp Feature: gene Location: 873-1358 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 879-1065 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 879-1065 bp Feature: gene Location: 1477-7134 bp Feature: domain Description: CARDB Location: 5176-5419 bp Feature: domain Description: CARDB Location: 5176-5419 bp Feature: domain Description: CARDB Location: 5461-5764 bp Feature: domain Description: CARDB Location: 5461-5764 bp Feature: gene Location: 7391-8023 bp Feature: domain Description: ATC_hydrolase Location: 7550-7970 bp Feature: domain Description: ATC_hydrolase Location: 7550-7970 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, CARDB (pfam07705), ATC_hydrolase (pfam14196)