myRT

myRT report for GCA_902800235.1_Rumen_uncultured_genome_RUG14553

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Seq: CADCEB010000004.1 uncultured Lachnospiraceae bacterium isolate RUG14553 genome assembly, contig: RUG14553_asm_4, whole genome shotgun sequence (35996 bp)
Overview 1 RT 1: 8643-18357 bp Neighborhood of RT #1 [8643, 18368] TraC-F-type TraC-F-type RVT-GII Spr RVT-GII Intron_maturas2 HNHc DUF4315 Feature: gene Location: 8643-10874 bp Feature: domain Description: TraC-F-type Location: 9099-9267 bp Feature: domain Description: TraC-F-type Location: 9099-9267 bp Feature: domain Description: TraC-F-type Location: 9453-10821 bp Feature: domain Description: TraC-F-type Location: 9453-1 0821 bp Feature: gene Location: 10876-11220 bp Feature: gene Location: 11520-13448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11832-12576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 832-1 2576 bp Feature: gene Location: 13541-13690 bp Feature: gene Location: 13787-15478 bp Feature: domain Description: Spr Location: 15161-15446 bp Feature: domain Description: Spr Location: 1 51 61 -1 5446 bp Feature: gene Location: 15651-15839 bp Feature: gene Location: 16103-17899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16370-17183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6370-1 71 83 bp Feature: domain Description: Intron_maturas2 Location: 17261-17687 bp Feature: domain Description: Intron_maturas2 Location: 1 7261 -1 7687 bp Feature: domain Description: HNHc Note: nucleases Location: 17720-17879 bp Feature: domain Description: HNHc Note: nucleases Location: 1 7720-1 7879 bp Feature: gene Location: 17911-18075 bp Feature: gene Location: 18114-18368 bp Feature: domain Description: DUF4315 Location: 18126-18357 bp Feature: domain Description: DUF431 5 Location: 1 81 26-1 8357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Spr (COG0791), TraC-F-type (TIGR02746), Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4315 (pfam14193)

Seq: CADCEB010000024.1 uncultured Lachnospiraceae bacterium isolate RUG14553 genome assembly, contig: RUG14553_asm_24, whole genome shotgun sequence (14468 bp)
Overview 1 RT 1: 6787-10254 bp Neighborhood of RT #1 [6787, 10254] RVT-DGRs Phage_XkdX Feature: gene Location: 6787-7614 bp Feature: gene Location: 7668-8219 bp Feature: gene Location: 8485-9633 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8680-9292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8680-92 92 bp Feature: gene Location: 9811-9960 bp Feature: domain Description: Phage_XkdX Location: 9820-9952 bp Feature: domain Description: Phage_XkdX Location: 982 0-9952 bp Feature: gene Location: 10117-10254 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_XkdX (pfam09693)

Seq: CADCEB010000462.1 uncultured Lachnospiraceae bacterium isolate RUG14553 genome assembly, contig: RUG14553_asm_462, whole genome shotgun sequence (2056 bp)
Overview 1 RT 1: 94-1736 bp Neighborhood of RT #1 [94, 1921] RVT-GII GIIM Feature: gene Location: 94-240 bp Feature: gene Location: 323-466 bp Feature: gene Location: 524-1921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845-1469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845-1469 bp Feature: domain Description: GIIM Note: maturase Location: 1523-1736 bp Feature: domain Description: GIIM Note: maturase Location: 1523 -173 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)