myRT

myRT report for GCA_902800385.1_Rumen_uncultured_genome_RUG14565

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Seq: CADCEH010000020.1 uncultured bacterium isolate RUG14565 genome assembly, contig: RUG14565_asm_20, whole genome shotgun sequence (60585 bp)
Overview 1 RT 1: 19541-22312 bp Neighborhood of RT #1 [19541, 22401] RVT-UG28b RVT-UG28b DUF3127 Feature: gene Location: 19541-19804 bp Feature: gene Location: 19815-20003 bp Feature: gene Location: 20062-21720 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 20473-20779 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 20473-20779 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 20887-21100 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 20887-21 1 00 bp Feature: gene Location: 21724-22023 bp Feature: gene Location: 22036-22401 bp Feature: domain Description: DUF3127 Location: 22045-22312 bp Feature: domain Description: DUF31 27 Location: 22045-2231 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG28b, DUF3127 (pfam11325)

Seq: CADCEH010000054.1 uncultured bacterium isolate RUG14565 genome assembly, contig: RUG14565_asm_54, whole genome shotgun sequence (98215 bp)
Overview 1 RT 1: 20270-30035 bp Neighborhood of RT #1 [20270, 30035] PRK00007 Flg_new Flg_new Flg_new Flg_new LRR_5 LRR_5 Flg_new Flg_new Flg_new Flg_new Flg_new Flg_new LRR_5 DUF1566 RVT-DGRs Avd_like Feature: gene Location: 20270-22372 bp Feature: domain Description: PRK00007 Location: 20285-22337 bp Feature: domain Description: PRK00007 Location: 2 02 85-2 2 337 bp Feature: gene Location: 22537-27726 bp Feature: domain Description: Flg_new Location: 22873-22996 bp Feature: domain Description: Flg_new Location: 2 2 873-2 2 996 bp Feature: domain Description: Flg_new Location: 23059-23254 bp Feature: domain Description: Flg_new Location: 2 3059-2 32 54 bp Feature: domain Description: Flg_new Location: 23272-23395 bp Feature: domain Description: Flg_new Location: 2 32 72 -2 3395 bp Feature: domain Description: Flg_new Location: 23458-23584 bp Feature: domain Description: Flg_new Location: 2 3458-2 3584 bp Feature: domain Description: LRR_5 Location: 23917-24265 bp Feature: domain Description: LRR_5 Location: 2 3917-2 42 65 bp Feature: domain Description: LRR_5 Location: 24445-24700 bp Feature: domain Description: LRR_5 Location: 2 4445-2 4700 bp Feature: domain Description: Flg_new Location: 24895-25114 bp Feature: domain Description: Flg_new Location: 2 4895-2 5114 bp Feature: domain Description: Flg_new Location: 25141-25339 bp Feature: domain Description: Flg_new Location: 2 5141-2 5339 bp Feature: domain Description: Flg_new Location: 25357-25534 bp Feature: domain Description: Flg_new Location: 2 5357-2 5534 bp Feature: domain Description: Flg_new Location: 25594-25735 bp Feature: domain Description: Flg_new Location: 2 5594-2 5735 bp Feature: domain Description: Flg_new Location: 25855-26047 bp Feature: domain Description: Flg_new Location: 2 5855-2 6047 bp Feature: domain Description: Flg_new Location: 26092-26284 bp Feature: domain Description: Flg_new Location: 2 6092 -2 62 84 bp Feature: domain Description: LRR_5 Location: 26674-26764 bp Feature: domain Description: LRR_5 Location: 2 6674-2 6764 bp Feature: gene Location: 27743-29317 bp Feature: domain Description: DUF1566 Location: 27881-28013 bp Feature: domain Description: DUF1566 Location: 2 7881-2 8013 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 28226-28973 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 82 2 6-2 8973 bp Feature: gene Location: 29358-29540 bp Feature: domain Description: Avd_like Location: 29385-29508 bp Feature: domain Description: Avd_like Location: 2 9385-2 9508 bp Feature: gene Location: 29544-30035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00007 (elongation factor G; Reviewed), Flg_new (pfam09479), LRR_5 (pfam13306), DUF1566 (pfam07603), RVT-DGRs, Avd_like (cd16376)

Seq: CADCEH010000154.1 uncultured bacterium isolate RUG14565 genome assembly, contig: RUG14565_asm_154, whole genome shotgun sequence (3604 bp)
Overview 1 RT 1: 163-3040 bp Neighborhood of RT #1 [163, 3339] RVT-GII GIIM RVT-GII Feature: gene Location: 163-1536 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523-1171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 523 -1171 bp Feature: domain Description: GIIM Note: maturase Location: 1246-1459 bp Feature: domain Description: GIIM Note: maturase Location: 1246-1459 bp Feature: gene Location: 1561-3339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2392-3040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 92-3 040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADCEH010000179.1 uncultured bacterium isolate RUG14565 genome assembly, contig: RUG14565_asm_179, whole genome shotgun sequence (2583 bp)
Overview 1 RT 1: 106-2554 bp Neighborhood of RT #1 [106, 2580] RVT-GII GIIM RpoE Feature: gene Location: 106-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 466-1114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 66-1114 bp Feature: domain Description: GIIM Note: maturase Location: 1189-1402 bp Feature: domain Description: GIIM Note: maturase Location: 1189-14 02 bp Feature: gene Location: 1633-1926 bp Feature: gene Location: 2014-2580 bp Feature: domain Description: RpoE Location: 2050-2554 bp Feature: domain Description: RpoE Location: 2050-2554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RpoE (COG3343)

Seq: CADCEH010000196.1 uncultured bacterium isolate RUG14565 genome assembly, contig: RUG14565_asm_196, whole genome shotgun sequence (3929 bp)
Overview 1 RT 1: 3-3927 bp Neighborhood of RT #1 [3, 3927] GT_2_WfgS_like RVT-GII GIIM Feature: gene Location: 3-251 bp Feature: domain Description: GT_2_WfgS_like Location: 6-120 bp Feature: domain Description: GT_2_WfgS_like Location: 6-120 bp Feature: gene Location: 496-1884 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874-1522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 874-15 22 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1801 bp Feature: domain Description: GIIM Note: maturase Location: 15 97-1801 bp Feature: gene Location: 1905-2051 bp Feature: gene Location: 2536-3927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT_2_WfgS_like (cd06433), RVT-GII, GIIM (pfam08388)