myRT

myRT report for GCA_902800755.1_Rumen_uncultured_genome_RUG14608

Download annotations/find similar RTs

Seq: CADCFU010000071.1 uncultured bacterium isolate RUG14608 genome assembly, contig: RUG14608_asm_71, whole genome shotgun sequence (14003 bp)
Overview 1 RT 1: 9357-13743 bp Neighborhood of RT #1 [9357, 13743] Axe1 RVT-GII GIIM Feature: gene Location: 9357-10745 bp Feature: domain Description: Axe1 Location: 9828-10704 bp Feature: domain Description: Axe1 Location: 9828-1 0704 bp Feature: gene Location: 11077-12024 bp Feature: gene Location: 12161-13516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12506-13151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2506-1 31 51 bp Feature: domain Description: GIIM Note: maturase Location: 13229-13433 bp Feature: domain Description: GIIM Note: maturase Location: 1 3229-1 3433 bp Feature: gene Location: 13393-13743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Axe1 (COG3458), RVT-GII, GIIM (pfam08388)

Seq: CADCFU010000083.1 uncultured bacterium isolate RUG14608 genome assembly, contig: RUG14608_asm_83, whole genome shotgun sequence (11876 bp)
Overview 1 RT 1: 1704-11651 bp Neighborhood of RT #1 [1704, 11731] DUF2341 Laminin_G_3 RVT-GII GIIM Feature: gene Location: 1704-5762 bp Feature: gene Location: 6045-9941 bp Feature: domain Description: DUF2341 Location: 6384-6540 bp Feature: domain Description: DUF2 341 Location: 6384-6540 bp Feature: domain Description: Laminin_G_3 Location: 6762-7212 bp Feature: domain Description: Laminin_G_3 Location: 6762 -72 12 bp Feature: gene Location: 10007-11731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10706-11354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10706-11354 bp Feature: domain Description: GIIM Note: maturase Location: 11429-11651 bp Feature: domain Description: GIIM Note: maturase Location: 1142 9-11651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2341 (pfam10102), Laminin_G_3 (pfam13385), RVT-GII, GIIM (pfam08388)

Seq: CADCFU010000103.1 uncultured bacterium isolate RUG14608 genome assembly, contig: RUG14608_asm_103, whole genome shotgun sequence (8475 bp)
Overview 1 RT 1: 4119-8053 bp Neighborhood of RT #1 [4119, 8394] LacZ LacZ Glyco_hydro2_C5 RVT-GII Feature: gene Location: 4119-4412 bp Feature: gene Location: 4490-6751 bp Feature: domain Description: LacZ Location: 4754-5063 bp Feature: domain Description: LacZ Location: 4754-5063 bp Feature: domain Description: LacZ Location: 5099-6218 bp Feature: domain Description: LacZ Location: 5099-6218 bp Feature: domain Description: Glyco_hydro2_C5 Location: 6473-6740 bp Feature: domain Description: Glyco_hydro2_C5 Location: 6473 -6740 bp Feature: gene Location: 7453-8394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7798-8053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7798-8053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacZ (COG3250), Glyco_hydro2_C5 (pfam18565), RVT-GII