myRT

myRT report for GCA_902801685.1_Rumen_uncultured_genome_RUG14702

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Seq: CADCIZ010000001.1 uncultured Erysipelotrichaceae bacterium isolate RUG14702 genome assembly, contig: RUG14702_asm_1, whole genome shotgun sequence (60610 bp)
Overview 1 RT 1: 8410-11929 bp Neighborhood of RT #1 [8410, 12693] RVT-DGRs MutS_I PulG Feature: gene Location: 8410-9204 bp Feature: gene Location: 9313-9450 bp Feature: gene Location: 9531-10739 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9738-10461 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9738-1 0461 bp Feature: gene Location: 11040-11459 bp Feature: domain Description: MutS_I Location: 11043-11214 bp Feature: domain Description: MutS_I Location: 1 1 043-1 1 21 4 bp Feature: gene Location: 11680-12693 bp Feature: domain Description: PulG Location: 11707-11929 bp Feature: domain Description: PulG Location: 1 1 707-1 1 929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MutS_I (pfam01624), PulG (pfam11773), RVT-DGRs

Seq: CADCIZ010000021.1 uncultured Erysipelotrichaceae bacterium isolate RUG14702 genome assembly, contig: RUG14702_asm_21, whole genome shotgun sequence (24715 bp)
Overview 1 RT 1: 14728-24020 bp Neighborhood of RT #1 [14728, 24241] rpoB rpoB PRK00566 RVT-DGRs Avd_like MutS_I Feature: gene Location: 14728-18399 bp Feature: domain Description: rpoB Location: 14770-15397 bp Feature: domain Description: rpoB Location: 14770-15397 bp Feature: domain Description: rpoB Location: 15397-18145 bp Feature: domain Description: rpoB Location: 15397-18145 bp Feature: gene Location: 18399-22034 bp Feature: domain Description: PRK00566 Location: 18411-21993 bp Feature: domain Description: PRK00566 Location: 18411-2 1993 bp Feature: gene Location: 22325-23515 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22535-23258 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 535-2 32 58 bp Feature: gene Location: 23490-23660 bp Feature: domain Description: Avd_like Location: 23496-23637 bp Feature: domain Description: Avd_like Location: 2 3496-2 3637 bp Feature: gene Location: 23819-24241 bp Feature: domain Description: MutS_I Location: 23822-24020 bp Feature: domain Description: MutS_I Location: 2 382 2 -2 402 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpoB (TIGR02013), PRK00566 (DNA-directed RNA polymerase subunit beta'; Provisional), RVT-DGRs, Avd_like (cd16376), MutS_I (pfam01624)

Seq: CADCIZ010000022.1 uncultured Erysipelotrichaceae bacterium isolate RUG14702 genome assembly, contig: RUG14702_asm_22, whole genome shotgun sequence (24333 bp)
Overview 1 RT 1: 14510-18629 bp Neighborhood of RT #1 [14510, 18700] RVT-DGRs InsQ gmk Feature: gene Location: 14510-15136 bp Feature: gene Location: 15191-15361 bp Feature: gene Location: 15531-16292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15741-16278 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15741-16278 bp Feature: gene Location: 16529-17644 bp Feature: domain Description: InsQ Location: 16532-17630 bp Feature: domain Description: InsQ Location: 1653 2-1763 0 bp Feature: gene Location: 18035-18700 bp Feature: domain Description: gmk Location: 18053-18629 bp Feature: domain Description: gmk Location: 18053 -18629 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, InsQ (COG0675), gmk (PRK14738)

Seq: CADCIZ010000058.1 uncultured Erysipelotrichaceae bacterium isolate RUG14702 genome assembly, contig: RUG14702_asm_58, whole genome shotgun sequence (4796 bp)
Overview 1 RT 1: 221-4582 bp Neighborhood of RT #1 [221, 4593] UPF0154 RVT-Retrons SirA TktA Feature: gene Location: 221-430 bp Feature: domain Description: UPF0154 Location: 251-422 bp Feature: domain Description: UPF0154 Location: 251-4 22 bp Feature: gene Location: 786-1748 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 930-1485 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 930-14 85 bp Feature: gene Location: 2189-2581 bp Feature: domain Description: SirA Location: 2195-2555 bp Feature: domain Description: SirA Location: 2195-2555 bp Feature: gene Location: 2638-4593 bp Feature: domain Description: TktA Location: 2644-4582 bp Feature: domain Description: TktA Location: 264 4 -4 582 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SirA (pfam10747), TktA (COG0021), RVT-Retrons