myRT

myRT report for GCA_902801905.1_Rumen_uncultured_genome_RUG14712

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Seq: CADCJU010000006.1 uncultured Lachnospiraceae bacterium isolate RUG14712 genome assembly, contig: RUG14712_asm_6, whole genome shotgun sequence (75098 bp)
Overview 1 RT 1: 11188-14501 bp Neighborhood of RT #1 [11188, 14501] LytT RVT-GII GIIM Feature: gene Location: 11188-11907 bp Feature: domain Description: LytT Location: 11197-11887 bp Feature: domain Description: LytT Location: 1 1 1 97-1 1 887 bp Feature: gene Location: 12149-12388 bp Feature: gene Location: 12410-13801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12725-13349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2725-1 3349 bp Feature: domain Description: GIIM Note: maturase Location: 13406-13634 bp Feature: domain Description: GIIM Note: maturase Location: 1 3406-1 3634 bp Feature: gene Location: 14004-14306 bp Feature: gene Location: 14313-14501 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LytT (COG3279), RVT-GII, GIIM (pfam08388)

Seq: CADCJU010000012.1 uncultured Lachnospiraceae bacterium isolate RUG14712 genome assembly, contig: RUG14712_asm_12, whole genome shotgun sequence (62018 bp)
Overview 1 RT 1: 46431-51822 bp Neighborhood of RT #1 [46431, 51854] eps_fam DUF5011 DUF5011 RVT-GII GIIM LysM GH18_CFLE_spore_hydrolase Nudix_Hydrolase_1 Feature: gene Location: 46431-47261 bp Feature: domain Description: eps_fam Location: 46485-47127 bp Feature: domain Description: eps_fam Location: 46485-4712 7 bp Feature: gene Location: 47329-48087 bp Feature: domain Description: DUF5011 Location: 47497-47638 bp Feature: domain Description: DUF5011 Location: 47497-47638 bp Feature: domain Description: DUF5011 Location: 47878-48055 bp Feature: domain Description: DUF5011 Location: 47878-48055 bp Feature: gene Location: 48535-49929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48850-49465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48850-49465 bp Feature: domain Description: GIIM Note: maturase Location: 49525-49756 bp Feature: domain Description: GIIM Note: maturase Location: 4952 5-49756 bp Feature: gene Location: 50084-51235 bp Feature: domain Description: LysM Location: 50111-50240 bp Feature: domain Description: LysM Location: 50111-502 40 bp Feature: domain Description: GH18_CFLE_spore_hydrolase Location: 50318-51206 bp Feature: domain Description: GH18_CFLE_spore_hydrolase Location: 50318-512 06 bp Feature: gene Location: 51282-51854 bp Feature: domain Description: Nudix_Hydrolase_1 Location: 51411-51822 bp Feature: domain Description: Nudix_Hydrolase_1 Location: 51411-5182 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT eps_fam (TIGR01007), DUF5011 (pfam16403), RVT-GII, GIIM (pfam08388), LysM (smart00257), GH18_CFLE_spore_hydrolase (cd02874), Nudix_Hydrolase_1 (cd03674)

Seq: CADCJU010000023.1 uncultured Lachnospiraceae bacterium isolate RUG14712 genome assembly, contig: RUG14712_asm_23, whole genome shotgun sequence (92125 bp)
Overview 1 RT 1: 3524-11034 bp Neighborhood of RT #1 [3524, 11342] YydB RVT-CRISPR COG4951 Cas2_I_II_III Cas_Cas1 Feature: gene Location: 3524-5275 bp Feature: domain Description: YydB Location: 3548-5234 bp Feature: domain Description: YydB Location: 3 548-523 4 bp Feature: gene Location: 5474-6448 bp Feature: gene Location: 6595-9513 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6805-7399 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 6805-73 99 bp Feature: domain Description: COG4951 Location: 8155-8794 bp Feature: domain Description: COG4951 Location: 8155-8794 bp Feature: gene Location: 9876-10169 bp Feature: domain Description: Cas2_I_II_III Location: 9882-10125 bp Feature: domain Description: Cas2_I_II_III Location: 9882-10125 bp Feature: gene Location: 10176-11342 bp Feature: domain Description: Cas_Cas1 Location: 10188-11034 bp Feature: domain Description: Cas_Cas1 Location: 10188-1103 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YydB (COG5293), RVT-CRISPR, COG4951 (Uncharacterized protein ), Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867)