myRT

myRT report for GCA_902802665.1_Rumen_uncultured_genome_RUG14797

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Seq: CADCMY010000059.1 uncultured Prevotellaceae bacterium isolate RUG14797 genome assembly, contig: RUG14797_asm_59, whole genome shotgun sequence (52514 bp)
Overview 1 RT 1: 38549-42499 bp Neighborhood of RT #1 [38549, 42499] RVT-DGRs Feature: gene Location: 38549-39997 bp Feature: gene Location: 40104-40334 bp Feature: gene Location: 40458-41717 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40662-41406 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 40662-41 406 bp Feature: gene Location: 41794-42111 bp Feature: gene Location: 42113-42499 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: CADCMY010000067.1 uncultured Prevotellaceae bacterium isolate RUG14797 genome assembly, contig: RUG14797_asm_67, whole genome shotgun sequence (22808 bp)
Overview 1 RT 1: 5304-11497 bp Neighborhood of RT #1 [5304, 11497] HA HATPase_c_3 HSDR_N_2 RVT-UG5 DUF3791 Feature: gene Location: 5304-5534 bp Feature: domain Description: HA Location: 5316-5487 bp Feature: domain Description: HA Location: 5316-5487 bp Feature: gene Location: 5648-7693 bp Feature: domain Description: HATPase_c_3 Location: 5714-6056 bp Feature: domain Description: HATPase_c_3 Location: 5714-6056 bp Feature: domain Description: HSDR_N_2 Location: 7181-7379 bp Feature: domain Description: HSDR_N_2 Location: 7181-7379 bp Feature: gene Location: 7721-10639 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8186-8666 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8186-8666 bp Feature: gene Location: 10737-10961 bp Feature: domain Description: DUF3791 Location: 10770-10944 bp Feature: domain Description: DUF3791 Location: 10770-10944 bp Feature: gene Location: 11273-11497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HA (pfam03457), HATPase_c_3 (pfam13589), HSDR_N_2 (pfam13588), RVT-UG5, DUF3791 (pfam12668)

Seq: CADCMY010000104.1 uncultured Prevotellaceae bacterium isolate RUG14797 genome assembly, contig: RUG14797_asm_104, whole genome shotgun sequence (14094 bp)
Overview 1 RT 1: 11023-14093 bp Neighborhood of RT #1 [11023, 14093] FGase RVT-Retrons Feature: gene Location: 11023-11415 bp Feature: gene Location: 11465-12178 bp Feature: domain Description: FGase Location: 11579-12071 bp Feature: domain Description: FGase Location: 11579-12071 bp Feature: gene Location: 12700-13833 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12898-13513 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12898-13 513 bp Feature: gene Location: 13938-14093 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGase (pfam05013), RVT-Retrons

Seq: CADCMY010000106.1 uncultured Prevotellaceae bacterium isolate RUG14797 genome assembly, contig: RUG14797_asm_106, whole genome shotgun sequence (7658 bp)
Overview 1 RT 1: 1456-7620 bp Neighborhood of RT #1 [1456, 7620] WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WYL RVT-Retrons Feature: gene Location: 1456-2229 bp Feature: domain Description: WG_beta_rep Location: 1657-1750 bp Feature: domain Description: WG_beta_rep Location: 1657-1750 bp Feature: domain Description: WG_beta_rep Location: 1819-1909 bp Feature: domain Description: WG_beta_rep Location: 1819-1909 bp Feature: domain Description: WG_beta_rep Location: 1954-2047 bp Feature: domain Description: WG_beta_rep Location: 1954 -204 7 bp Feature: domain Description: WG_beta_rep Location: 2047-2116 bp Feature: domain Description: WG_beta_rep Location: 204 7-2116 bp Feature: gene Location: 2232-3311 bp Feature: domain Description: WYL Location: 2709-3267 bp Feature: domain Description: WYL Location: 2709-3267 bp Feature: gene Location: 3668-5164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3866-4469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3866-4 4 69 bp Feature: gene Location: 5154-6068 bp Feature: gene Location: 6085-7620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WG_beta_rep (pfam14903), WYL (pfam13280), RVT-Retrons

Seq: CADCMY010000215.1 uncultured Prevotellaceae bacterium isolate RUG14797 genome assembly, contig: RUG14797_asm_215, whole genome shotgun sequence (5054 bp)
Overview 1 RT 1: 1228-5047 bp Neighborhood of RT #1 [1228, 5047] PRK02877 COG1373 RVT-GII GIIM Feature: gene Location: 1228-1545 bp Feature: domain Description: PRK02877 Location: 1231-1543 bp Feature: domain Description: PRK02877 Location: 1231-15 43 bp Feature: gene Location: 1979-3163 bp Feature: domain Description: COG1373 Location: 2084-3152 bp Feature: domain Description: COG1373 Location: 2084-315 2 bp Feature: gene Location: 3262-4572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3466-4156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3466-415 6 bp Feature: domain Description: GIIM Note: maturase Location: 4240-4447 bp Feature: domain Description: GIIM Note: maturase Location: 4240-4447 bp Feature: gene Location: 4727-5047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02877 (hypothetical protein; Provisional), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388)

Seq: CADCMY010000258.1 uncultured Prevotellaceae bacterium isolate RUG14797 genome assembly, contig: RUG14797_asm_258, whole genome shotgun sequence (2930 bp)
Overview 1 RT 1: 377-2667 bp Neighborhood of RT #1 [377, 2741] RVT-GII GIIM Feature: gene Location: 377-994 bp Feature: gene Location: 1181-1393 bp Feature: gene Location: 1491-2741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1746-2391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1746 -2391 bp Feature: domain Description: GIIM Note: maturase Location: 2475-2667 bp Feature: domain Description: GIIM Note: maturase Location: 2475-26 6 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADCMY010000275.1 uncultured Prevotellaceae bacterium isolate RUG14797 genome assembly, contig: RUG14797_asm_275, whole genome shotgun sequence (3158 bp)
Overview 1 RT 1: 34-3028 bp Neighborhood of RT #1 [34, 3063] Acetyltransf_10 RVT-GII Abi_2 Feature: gene Location: 34-633 bp Feature: domain Description: Acetyltransf_10 Location: 325-622 bp Feature: domain Description: Acetyltransf_10 Location: 325-622 bp Feature: gene Location: 827-1039 bp Feature: gene Location: 1134-2345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1305-1995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1305-1995 bp Feature: gene Location: 2557-3063 bp Feature: domain Description: Abi_2 Location: 2626-3028 bp Feature: domain Description: Abi_2 Location: 2626-3028 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acetyltransf_10 (pfam13673), RVT-GII, Abi_2 (pfam07751)