myRT

myRT report for GCA_902802775.1_Rumen_uncultured_genome_RUG14805

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Seq: CADCNN010000161.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_161, whole genome shotgun sequence (7257 bp)
Overview 1 RT 1: 4118-6805 bp Neighborhood of RT #1 [4118, 7152] Relaxase RVT-GII Intron_maturas2 Feature: gene Location: 4118-4372 bp Feature: gene Location: 4375-4830 bp Feature: domain Description: Relaxase Location: 4483-4786 bp Feature: domain Description: Relaxase Location: 4483-4786 bp Feature: gene Location: 5278-7152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5602-6424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5602-6424 bp Feature: domain Description: Intron_maturas2 Location: 6499-6805 bp Feature: domain Description: Intron_maturas2 Location: 6499-6805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Relaxase (pfam03432), RVT-GII, Intron_maturas2 (pfam01348)

Seq: CADCNN010000263.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_263, whole genome shotgun sequence (4688 bp)
Overview 1 RT 1: 1912-4653 bp Neighborhood of RT #1 [1912, 4685] RVT-GII GIIM P-type_ATPase_HM Feature: gene Location: 1912-2103 bp Feature: gene Location: 2440-2616 bp Feature: gene Location: 2620-3930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2872-3562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 872 -3562 bp Feature: domain Description: GIIM Note: maturase Location: 3622-3835 bp Feature: domain Description: GIIM Note: maturase Location: 362 2 -3835 bp Feature: gene Location: 3933-4685 bp Feature: domain Description: P-type_ATPase_HM Location: 4020-4653 bp Feature: domain Description: P-type_ATPase_HM Location: 402 0-4653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), P-type_ATPase_HM (cd07553)

Seq: CADCNN010000302.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_302, whole genome shotgun sequence (6216 bp)
Overview 1 RT 1: 2246-5553 bp Neighborhood of RT #1 [2246, 5621] AAA_21 TIGR02646 RVT-GII GIIM Feature: gene Location: 2246-3640 bp Feature: domain Description: AAA_21 Location: 2486-3332 bp Feature: domain Description: AAA_21 Location: 2486-3 3 3 2 bp Feature: gene Location: 3641-4234 bp Feature: domain Description: TIGR02646 Location: 3719-3998 bp Feature: domain Description: TIGR02646 Location: 3 719-3 998 bp Feature: gene Location: 4323-5621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578-5268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4578-5268 bp Feature: domain Description: GIIM Note: maturase Location: 5328-5553 bp Feature: domain Description: GIIM Note: maturase Location: 53 28-5553 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), TIGR02646 (TIGR02646 family protein), RVT-GII, GIIM (pfam08388)

Seq: CADCNN010000308.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_308, whole genome shotgun sequence (4178 bp)
Overview 1 RT 1: 1420-3908 bp Neighborhood of RT #1 [1420, 3985] RVT-GII RVT-GII GIIM Feature: gene Location: 1420-1692 bp Feature: gene Location: 1981-2166 bp Feature: gene Location: 2266-3018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581-2965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581-2965 bp Feature: gene Location: 3350-3985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3416-3626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 16-3626 bp Feature: domain Description: GIIM Note: maturase Location: 3686-3908 bp Feature: domain Description: GIIM Note: maturase Location: 3686-3908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADCNN010000335.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_335, whole genome shotgun sequence (3869 bp)
Overview 1 RT 1: 297-3022 bp Neighborhood of RT #1 [297, 3867] RVT-GII Intron_maturas2 Relaxase Feature: gene Location: 297-443 bp Feature: gene Location: 445-636 bp Feature: gene Location: 709-2526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 973-1795 bp Feature: domain Description: Intron_maturas2 Location: 1870-2176 bp Feature: domain Description: Intron_maturas2 Location: 1870-2176 bp Feature: gene Location: 2599-3867 bp Feature: domain Description: Relaxase Location: 2629-3022 bp Feature: domain Description: Relaxase Location: 2629-3022 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), Relaxase (pfam03432)

Seq: CADCNN010000463.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_463, whole genome shotgun sequence (2927 bp)
Overview 1 RT 1: 722-2588 bp Neighborhood of RT #1 [722, 2704] RVT-GII HNHc Feature: gene Location: 722-2704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154-1892 bp Feature: domain Description: HNHc Note: nucleases Location: 2438-2588 bp Feature: domain Description: HNHc Note: nucleases Location: 2438-2588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: CADCNN010000511.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_511, whole genome shotgun sequence (3013 bp)
Overview 1 RT 1: 1-3010 bp Neighborhood of RT #1 [1, 3012] COG1373 RVT-GII GIIM RVT-UNC Feature: gene Location: 1-375 bp Feature: domain Description: COG1373 Location: 16-307 bp Feature: domain Description: COG137 3 Location: 16-307 bp Feature: gene Location: 695-1066 bp Feature: gene Location: 1135-2331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1312-1972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1312-197 2 bp Feature: domain Description: GIIM Note: maturase Location: 2053-2257 bp Feature: domain Description: GIIM Note: maturase Location: 2053-2257 bp Feature: gene Location: 2752-3012 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 2800-3010 bp Feature: domain Description: RVT-UNC Note: UNC RT Location: 2800-3010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388), B3/B4(RVT-UNC)

Seq: CADCNN010000527.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_527, whole genome shotgun sequence (2597 bp)
Overview 1 RT 1: 46-2596 bp Neighborhood of RT #1 [46, 2596] RVT-CRISPR-like Feature: gene Location: 46-762 bp Feature: gene Location: 767-1921 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 977-1580 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 977-158 0 bp Feature: gene Location: 2321-2596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR

Seq: CADCNN010000546.1 uncultured Sarcina sp. isolate RUG14805 genome assembly, contig: RUG14805_asm_546, whole genome shotgun sequence (2514 bp)
Overview 1 RT 1: 3-2512 bp Neighborhood of RT #1 [3, 2512] TetR_C_8 RVT-GII GIIM Feature: gene Location: 3-359 bp Feature: domain Description: TetR_C_8 Location: 9-255 bp Feature: domain Description: TetR_C_8 Location: 9 -255 bp Feature: gene Location: 443-814 bp Feature: gene Location: 931-2214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135-1750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1135-1750 bp Feature: domain Description: GIIM Note: maturase Location: 1810-2041 bp Feature: domain Description: GIIM Note: maturase Location: 1810-2041 bp Feature: gene Location: 2309-2512 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TetR_C_8 (pfam14278), RVT-GII, GIIM (pfam08388)