myRT

myRT report for GCA_902803815.1_Rumen_uncultured_genome_RUG14910

Download annotations/find similar RTs

Seq: CADCRN010000147.1 uncultured Lachnospiraceae bacterium isolate RUG14910 genome assembly, contig: RUG14910_asm_147, whole genome shotgun sequence (3460 bp)
Overview 1 RT 1: 243-2008 bp Neighborhood of RT #1 [243, 2008] PhdYeFM_antitox PIN_3 RVT-GII Acetyltransf_4 Feature: gene Location: 243-578 bp Feature: domain Description: PhdYeFM_antitox Location: 246-450 bp Feature: domain Description: PhdYeFM_antitox Location: 246-450 bp Feature: gene Location: 594-989 bp Feature: domain Description: PIN_3 Location: 603-927 bp Feature: domain Description: PIN_3 Location: 603-927 bp Feature: gene Location: 1035-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1083-1293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 083-1 293 bp Feature: gene Location: 1394-1705 bp Feature: domain Description: Acetyltransf_4 Location: 1481-1580 bp Feature: domain Description: Acetyltransf_4 Location: 1 481 -1 580 bp Feature: gene Location: 1838-2008 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), PIN_3 (pfam13470), RVT-GII, Acetyltransf_4 (pfam13420)

Seq: CADCRN010000229.1 uncultured Lachnospiraceae bacterium isolate RUG14910 genome assembly, contig: RUG14910_asm_229, whole genome shotgun sequence (13377 bp)
Overview 1 RT 1: 3239-8840 bp Neighborhood of RT #1 [3239, 8840] Sortase_D_2 COG4646 KOG1000 RVT-GII Intron_maturas2 Feature: gene Location: 3239-3934 bp Feature: domain Description: Sortase_D_2 Location: 3443-3815 bp Feature: domain Description: Sortase_D_2 Location: 3443-3815 bp Feature: gene Location: 3939-6056 bp Feature: domain Description: COG4646 Location: 4050-4479 bp Feature: domain Description: COG4646 Location: 4050-4479 bp Feature: domain Description: KOG1000 Location: 4752-5187 bp Feature: domain Description: KOG1000 Location: 4752 -5187 bp Feature: gene Location: 6067-7869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6331-7150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6331-7150 bp Feature: domain Description: Intron_maturas2 Location: 7219-7528 bp Feature: domain Description: Intron_maturas2 Location: 72 19-752 8 bp Feature: gene Location: 7871-8083 bp Feature: gene Location: 8166-8840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Sortase_D_2 (cd06166), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348)