myRT

myRT report for GCA_902803845.1_Rumen_uncultured_genome_RUG14911

Download annotations/find similar RTs

Seq: CADCRL010000008.1 uncultured Lachnospiraceae bacterium isolate RUG14911 genome assembly, contig: RUG14911_asm_8, whole genome shotgun sequence (9294 bp)
Overview 1 RT 1: 7229-9122 bp Neighborhood of RT #1 [7229, 9292] AgrB COG1373 RVT-GII GIIM Feature: gene Location: 7229-7852 bp Feature: domain Description: AgrB Location: 7253-7787 bp Feature: domain Description: AgrB Location: 7253-7787 bp Feature: gene Location: 7934-8140 bp Feature: domain Description: COG1373 Location: 7940-8120 bp Feature: domain Description: COG1 373 Location: 7940-81 20 bp Feature: gene Location: 8606-9292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8609-8834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8609-8834 bp Feature: domain Description: GIIM Note: maturase Location: 8894-9122 bp Feature: domain Description: GIIM Note: maturase Location: 8894-91 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AgrB (smart00793), COG1373 (Predicted ATPase, AAA+ superfamily ), RVT-GII, GIIM (pfam08388)

Seq: CADCRL010000058.1 uncultured Lachnospiraceae bacterium isolate RUG14911 genome assembly, contig: RUG14911_asm_58, whole genome shotgun sequence (15135 bp)
Overview 1 RT 1: 3-3362 bp Neighborhood of RT #1 [3, 3388] RVT-GII GIIM HIGH_NTase1 recA Feature: gene Location: 3-689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-2 31 bp Feature: domain Description: GIIM Note: maturase Location: 291-519 bp Feature: domain Description: GIIM Note: maturase Location: 2 91-519 bp Feature: gene Location: 918-2141 bp Feature: domain Description: HIGH_NTase1 Location: 921-2070 bp Feature: domain Description: HIGH_NTase1 Location: 92 1-2 070 bp Feature: gene Location: 2324-3388 bp Feature: domain Description: recA Location: 2330-3362 bp Feature: domain Description: recA Location: 2 330-3362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recA (PRK09519), RVT-GII, GIIM (pfam08388), HIGH_NTase1 (pfam05636)