myRT

myRT report for GCA_902806435.1_AVDCRST-MAG81

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Seq: CADCWO010000067.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE158, whole genome shotgun sequence (15639 bp)
Overview 1 RT 1: 6016-10176 bp Neighborhood of RT #1 [6016, 10196] DDE_Tnp_IS1 RVT-GII GIIM PLN02502 Feature: gene Location: 6016-6477 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6064-6463 bp Feature: domain Description: DDE_Tnp_IS1 Location: 6064-6463 bp Feature: gene Location: 6693-6842 bp Feature: gene Location: 7000-8295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7255-7942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7255-7942 bp Feature: domain Description: GIIM Note: maturase Location: 8017-8227 bp Feature: domain Description: GIIM Note: maturase Location: 801 7-8227 bp Feature: gene Location: 8449-8574 bp Feature: gene Location: 8664-10196 bp Ori: CAA9566830.1 Feature: domain Description: PLN02502 Location: 8688-10176 bp Feature: domain Description: PLN02502 Location: 8688-1 01 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), RVT-GII, GIIM (pfam08388), PLN02502 (lysyl-tRNA synthetase)

Seq: CADCWO010000055.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE1387, whole genome shotgun sequence (4814 bp)
Overview 1 RT 1: 3-4814 bp Neighborhood of RT #1 [3, 4814] R1-I-EN RVT-CRISPR-like bZIP Feature: gene Location: 3-137 bp Feature: gene Location: 142-3702 bp Feature: domain Description: R1-I-EN Location: 436-1003 bp Feature: domain Description: R1-I-EN Location: 436-1003 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1909-2566 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 1909-2 566 bp Feature: gene Location: 3721-4560 bp Feature: domain Description: bZIP Location: 3799-3886 bp Feature: domain Description: bZIP Location: 3799-3886 bp Feature: gene Location: 4674-4814 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R1-I-EN (cd09077), RVT-CRISPR, bZIP (cl21462)

Seq: CADCWO010000033.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE1206, whole genome shotgun sequence (5292 bp)
Overview 1 RT 1: 3098-5280 bp Neighborhood of RT #1 [3098, 5291] DDE_Tnp_IS240 Rve RVT_N RVT-GII RVT-GII GIIM McrA Feature: gene Location: 3098-3406 bp Feature: domain Description: DDE_Tnp_IS240 Location: 3101-3332 bp Feature: domain Description: DDE_Tnp_IS240 Location: 3 101-3 3 3 2 bp Feature: gene Location: 3393-3749 bp Ori: CAA9559662.1 Feature: domain Description: Rve Location: 3396-3699 bp Feature: domain Description: Rve Location: 3 3 96-3 699 bp Feature: gene Location: 3855-5291 bp Ori: CAA9559673.1 Feature: domain Description: RVT_N Location: 3861-4059 bp Feature: domain Description: RVT_N Location: 3 861-4059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4116-4542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4116-4542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542-4710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4542-4710 bp Feature: domain Description: GIIM Note: maturase Location: 4767-4956 bp Feature: domain Description: GIIM Note: maturase Location: 4767-4956 bp Feature: domain Description: McrA Location: 4962-5280 bp Feature: domain Description: McrA Location: 4962-5280 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS240 (pfam13610), Rve (COG3316), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: CADCWO010000082.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE1760, whole genome shotgun sequence (4052 bp)
Overview 1 RT 1: 184-1710 bp Neighborhood of RT #1 [184, 1710] RVT-GII GIIM McrA Feature: gene Location: 184-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190-457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 190-4 57 bp Feature: domain Description: GIIM Note: maturase Location: 535-769 bp Feature: domain Description: GIIM Note: maturase Location: 535-769 bp Feature: domain Description: McrA Location: 862-1144 bp Feature: domain Description: McrA Location: 862-114 4 bp Feature: gene Location: 1229-1555 bp Feature: gene Location: 1621-1710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: CADCWO010000044.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE1275, whole genome shotgun sequence (5104 bp)
Overview 1 RT 1: 1984-5003 bp Neighborhood of RT #1 [1984, 5104] SRAP umuC RVT-GII GIIM HNHc Feature: gene Location: 1984-2652 bp Feature: domain Description: SRAP Location: 1987-2647 bp Feature: domain Description: SRAP Location: 1987-2647 bp Feature: gene Location: 2679-3941 bp Ori: CAA9561662.1 Feature: domain Description: umuC Location: 2715-3936 bp Feature: domain Description: umuC Location: 2715 -3936 bp Feature: gene Location: 3938-5104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067-4334 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4067-4334 bp Feature: domain Description: GIIM Note: maturase Location: 4385-4619 bp Feature: domain Description: GIIM Note: maturase Location: 4385 -4619 bp Feature: domain Description: HNHc Note: nucleases Location: 4847-5003 bp Feature: domain Description: HNHc Note: nucleases Location: 4847-5 003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SRAP (pfam02586), umuC (PRK03609), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CADCWO010000125.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE2292, whole genome shotgun sequence (3285 bp)
Overview 1 RT 1: 687-3038 bp Neighborhood of RT #1 [687, 3109] DDE_Tnp_ISAZ013 RVT-GII GIIM Feature: gene Location: 687-1265 bp Ori: CAA9576178.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 972-1260 bp Feature: domain Description: DDE_Tnp_ISAZ013 Location: 972-126 0 bp Feature: gene Location: 1446-1727 bp Feature: gene Location: 1733-3109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2060-2741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206 0-2741 bp Feature: domain Description: GIIM Note: maturase Location: 2831-3038 bp Feature: domain Description: GIIM Note: maturase Location: 2831-3038 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_ISAZ013 (pfam07592), RVT-GII, GIIM (pfam08388)

Seq: CADCWO010000016.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE1071, whole genome shotgun sequence (5649 bp)
Overview 1 RT 1: 53-5648 bp Neighborhood of RT #1 [53, 5648] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve CD_NC-like Feature: gene Location: 53-340 bp Feature: gene Location: 337-4155 bp Feature: domain Description: retropepsin_like Location: 421-703 bp Feature: domain Description: retropepsin_like Location: 421-7 03 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1459-1669 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1459-1669 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1972-2344 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 197 2-2344 bp Feature: domain Description: Integrase_H2C2 Location: 2752-2914 bp Feature: domain Description: Integrase_H2C2 Location: 27 52-2914 bp Feature: domain Description: rve Location: 2980-3316 bp Feature: domain Description: rve Location: 2980-3316 bp Feature: domain Description: CD_NC-like Location: 3862-4012 bp Feature: domain Description: CD_NC-like Location: 3862-4012 bp Feature: gene Location: 4155-5648 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-DGRs/RVT-UG21/RVT-UG26(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), CD_NC-like (cd18980)

Seq: CADCWO010000129.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE235, whole genome shotgun sequence (12511 bp)
Overview 1 RT 1: 3521-8948 bp Neighborhood of RT #1 [3521, 9058] group_II_RT_mat RVT-GII RVT-GII GIIM RVT-GII GIIM DDE_Tnp_IS240 Rve Feature: gene Location: 3521-3772 bp Feature: gene Location: 3978-4370 bp Ori: CAA9576773.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 4140-4317 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4140-4317 bp Feature: gene Location: 4367-4879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373-4811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4373-48 11 bp Feature: gene Location: 5151-5393 bp Feature: gene Location: 5403-7133 bp Ori: CAA9576787.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5694-6402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5694-6402 bp Feature: domain Description: GIIM Note: maturase Location: 6471-6663 bp Feature: domain Description: GIIM Note: maturase Location: 6471-6663 bp Feature: gene Location: 7221-7769 bp Ori: CAA9576790.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7227-7407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7227-7407 bp Feature: domain Description: GIIM Note: maturase Location: 7482-7692 bp Feature: domain Description: GIIM Note: maturase Location: 748 2-7692 bp Feature: gene Location: 8270-8761 bp Feature: domain Description: DDE_Tnp_IS240 Location: 8333-8681 bp Feature: domain Description: DDE_Tnp_IS240 Location: 8 333-8 68 1 bp Feature: gene Location: 8819-9058 bp Feature: domain Description: Rve Location: 8834-8948 bp Feature: domain Description: Rve Location: 8 8 34-8 948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS240 (pfam13610), Rve (COG3316)

Seq: CADCWO010000201.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE438, whole genome shotgun sequence (9285 bp)
Overview 1 RT 1: 3-8415 bp Neighborhood of RT #1 [3, 8415] AIR1 retropepsin_like Dcm RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 rve PHD_PHRF1 Feature: gene Location: 3-3491 bp Ori: CAA9586170.1 Feature: domain Description: AIR1 Location: 471-798 bp Feature: domain Description: AIR1 Location: 471-79 8 bp Feature: domain Description: retropepsin_like Location: 1551-1821 bp Feature: domain Description: retropepsin_like Location: 1551-1821 bp Feature: domain Description: Dcm Location: 2244-2664 bp Feature: domain Description: Dcm Location: 2244-2664 bp Feature: gene Location: 3504-6635 bp Ori: CAA9586175.1 Feature: RT Description: RVT-UNC Note: UNC RT Location: 4170-4317 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 4170-4317 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4635-4992 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 4635-49 9 2 bp Feature: domain Description: Integrase_H2C2 Location: 5337-5496 bp Feature: domain Description: Integrase_H2C2 Location: 5337-549 6 bp Feature: domain Description: rve Location: 5550-5880 bp Feature: domain Description: rve Location: 5550-5880 bp Feature: domain Description: PHD_PHRF1 Location: 6462-6594 bp Feature: domain Description: PHD_PHRF1 Location: 6462-659 4 bp Feature: gene Location: 7287-7400 bp Feature: gene Location: 8137-8415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), retropepsin_like (cd00303), Dcm (COG0270), RVT-UG3/RVT-UG20/RVT-UG7/RVT-UG21(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665), PHD_PHRF1 (cd15536)

Seq: CADCWO010000091.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE1864, whole genome shotgun sequence (3847 bp)
Overview 1 RT 1: 1-3306 bp Neighborhood of RT #1 [1, 3377] retropepsin_like RVT-UNC RNase_HI_RT_Ty3 Integrase_H2C2 Retrotrans_gag ZnF_C2HC Feature: gene Location: 1-2370 bp Feature: domain Description: retropepsin_like Location: 106-367 bp Feature: domain Description: retropepsin_like Location: 10 6-367 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 1093-1285 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 10 93-1285 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1573-1933 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 1573-1933 bp Feature: domain Description: Integrase_H2C2 Location: 2188-2347 bp Feature: domain Description: Integrase_H2C2 Location: 2188-2347 bp Feature: gene Location: 2376-3377 bp Ori: CAA9570973.1 Feature: domain Description: Retrotrans_gag Location: 2727-3000 bp Feature: domain Description: Retrotrans_gag Location: 2727-3000 bp Feature: domain Description: ZnF_C2HC Location: 3261-3306 bp Feature: domain Description: ZnF_C2HC Location: 3261-3306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT retropepsin_like (cd00303), RVT-UG11/RVT-UG26/RVT-UG21/RVT-UG4(RVT-UNC), RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), Retrotrans_gag (pfam03732), ZnF_C2HC (smart00343)

Seq: CADCWO010000259.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE805, whole genome shotgun sequence (6733 bp)
Overview 1 RT 1: 612-6403 bp Neighborhood of RT #1 [612, 6732] AIR1 retropepsin_like RVT-UG11 RNase_HI_RT_Ty3 Integrase_H2C2 rve Feature: gene Location: 612-1106 bp Feature: gene Location: 1475-3046 bp Feature: domain Description: AIR1 Location: 2822-2948 bp Feature: domain Description: AIR1 Location: 2822-2948 bp Feature: gene Location: 3052-6732 bp Feature: domain Description: retropepsin_like Location: 3622-3862 bp Feature: domain Description: retropepsin_like Location: 3622-3862 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4591-4846 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4591-4846 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 5173-5512 bp Feature: domain Description: RNase_HI_RT_Ty3 Location: 5173-5512 bp Feature: domain Description: Integrase_H2C2 Location: 5842-6016 bp Feature: domain Description: Integrase_H2C2 Location: 5842-6016 bp Feature: domain Description: rve Location: 6067-6403 bp Feature: domain Description: rve Location: 6067-6403 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AIR1 (COG5082), retropepsin_like (cd00303), RVT-UG11, RNase_HI_RT_Ty3 (cd09274), Integrase_H2C2 (pfam17921), rve (pfam00665)

Seq: CADCWO010000109.1 uncultured Synechococcales cyanobacterium isolate AVDCRST_MAG81 genome assembly, contig: NODE203, whole genome shotgun sequence (13469 bp)
Overview 1 RT 1: 2-5304 bp Neighborhood of RT #1 [2, 5327] RVT_N RVT-GII RVT-GII GIIM KOG4768 RVT-GII GIIM McrA HTH_Tnp_4 DDE_Tnp_4 Feature: gene Location: 2-124 bp Feature: gene Location: 761-1411 bp Feature: domain Description: RVT_N Location: 764-974 bp Feature: domain Description: RVT_N Location: 764-974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016-1391 bp Feature: gene Location: 1555-1680 bp Feature: gene Location: 2000-3676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2282-2966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2282-2966 bp Feature: domain Description: GIIM Note: maturase Location: 3035-3236 bp Feature: domain Description: GIIM Note: maturase Location: 3035-3236 bp Feature: domain Description: KOG4768 Location: 3509-3644 bp Feature: domain Description: KOG4768 Location: 3509-3644 bp Feature: gene Location: 3673-4422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835-4000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3835-4000 bp Feature: domain Description: GIIM Note: maturase Location: 4057-4249 bp Feature: domain Description: GIIM Note: maturase Location: 4057-4249 bp Feature: domain Description: McrA Location: 4249-4396 bp Feature: domain Description: McrA Location: 4249-4396 bp Feature: gene Location: 4498-4932 bp Feature: domain Description: HTH_Tnp_4 Location: 4639-4789 bp Feature: domain Description: HTH_Tnp_4 Location: 4639-4789 bp Feature: gene Location: 4959-5327 bp Ori: CAA9574091.1 Feature: domain Description: DDE_Tnp_4 Location: 4980-5304 bp Feature: domain Description: DDE_Tnp_4 Location: 4980-5304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), McrA (COG4058), HTH_Tnp_4 (pfam13613), DDE_Tnp_4 (pfam13359)