myRT

myRT report for GCA_902807105.1_PBIO724

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Seq: CADCYC010000005.1 Pseudomonas aeruginosa strain PBIO724 genome assembly, contig: contig00005, whole genome shotgun sequence (374363 bp)
Overview 1 RT 1: 292480-302786 bp Neighborhood of RT #1 [292480, 302788] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 292480-293601 bp Feature: domain Description: COG3177 Location: 292498-293590 bp Feature: domain Description: COG31 77 Location: 292498-293590 bp Feature: gene Location: 293860-293997 bp Feature: gene Location: 294325-296010 bp Feature: RT Description: RVT_N Location: 294382-294622 bp Feature: RT Description: RVT_N Location: 294382-294622 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294670-295306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294670-295306 bp Feature: domain Description: GIIM Note: maturase Location: 295360-295591 bp Feature: domain Description: GIIM Note: maturase Location: 295360-295591 bp Feature: domain Description: HNH Note: nucleases Location: 295843-295981 bp Feature: domain Description: HNH Note: nucleases Location: 295843-295981 bp Feature: gene Location: 297091-300828 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 297199-297856 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2971 99-297856 bp Feature: domain Description: PRK09776 Location: 298069-298540 bp Feature: domain Description: PRK09776 Location: 298069-298540 bp Feature: domain Description: PAS Location: 298597-299122 bp Feature: domain Description: PAS Location: 298597-2991 22 bp Feature: domain Description: PRK10060 Location: 299131-300778 bp Feature: domain Description: PRK1 0060 Location: 2991 31 -300778 bp Feature: gene Location: 300935-302788 bp Feature: domain Description: PRK05658 Location: 300947-302786 bp Feature: domain Description: PRK05658 Location: 300947-302786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)