myRT

myRT report for GCA_902807205.1_PBIO1940

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Seq: CADCYK010000007.1 Escherichia coli strain PBIO1940 genome assembly, contig: NODE_7_length_187184_cov_29.539, whole genome shotgun sequence (187184 bp)
Overview 1 RT 1: 133838-137721 bp Neighborhood of RT #1 [133838, 137726] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 133838-134554 bp Feature: domain Description: rph Location: 133841-134549 bp Feature: domain Description: rph Location: 1 33841 -1 34549 bp Feature: gene Location: 134606-135262 bp Feature: domain Description: pyrE Location: 134624-135257 bp Feature: domain Description: pyrE Location: 1 34624-1 35257 bp Feature: gene Location: 135560-136519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 135695-136244 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 35695-1 36244 bp Feature: gene Location: 136565-137161 bp Feature: domain Description: slmA Location: 136571-137147 bp Feature: domain Description: slmA Location: 1 36571 -1 371 47 bp Feature: gene Location: 137268-137726 bp Feature: domain Description: dut Location: 137274-137721 bp Feature: domain Description: dut Location: 1 37274-1 37721 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: CADCYK010000031.1 Escherichia coli strain PBIO1940 genome assembly, contig: NODE_31_length_43339_cov_27.2496, whole genome shotgun sequence (43339 bp)
Overview 1 RT 1: 28436-30989 bp Neighborhood of RT #1 [28436, 30989] Inovirus_Gp2 RVT-GII Feature: gene Location: 28436-28999 bp Feature: domain Description: Inovirus_Gp2 Location: 28493-28934 bp Feature: domain Description: Inovirus_Gp2 Location: 2 8493-2 8934 bp Feature: gene Location: 29463-29612 bp Feature: gene Location: 29810-30487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29924-30476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 992 4-30476 bp Feature: gene Location: 30474-30782 bp Feature: gene Location: 30816-30989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), RVT-GII

Seq: CADCYK010000075.1 Escherichia coli strain PBIO1940 genome assembly, contig: NODE_75_length_3441_cov_22.7631, whole genome shotgun sequence (3441 bp)
Overview 1 RT 1: 1864-2903 bp Neighborhood of RT #1 [1864, 3439] RVT-UG17 Feature: gene Location: 1864-2058 bp Feature: gene Location: 2202-2336 bp Feature: gene Location: 2444-3439 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2450-2903 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2450-2903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG17