myRT

myRT report for GCA_902807265.1_PBIO1946

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Seq: CADCYW010000068.1 Escherichia coli strain PBIO1946 genome assembly, contig: NODE_68_length_16247_cov_15.5061, whole genome shotgun sequence (16247 bp)
Overview 1 RT 1: 3543-7779 bp Neighborhood of RT #1 [3543, 7779] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3543-3776 bp Feature: domain Description: DUF905 Location: 3573-3771 bp Feature: domain Description: DUF905 Location: 3573-3771 bp Feature: gene Location: 3834-4274 bp Feature: domain Description: PRK13732 Location: 3840-4272 bp Feature: domain Description: PRK1 3732 Location: 3840-4272 bp Feature: gene Location: 4469-6370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4736-5567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4736-5567 bp Feature: domain Description: Intron_maturas2 Location: 5681-5939 bp Feature: domain Description: Intron_maturas2 Location: 5681 -5939 bp Feature: domain Description: HNHc Note: nucleases Location: 6113-6275 bp Feature: domain Description: HNHc Note: nucleases Location: 61 1 3-6275 bp Feature: gene Location: 7087-7323 bp Feature: gene Location: 7324-7779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CADCYW010000084.1 Escherichia coli strain PBIO1946 genome assembly, contig: NODE_84_length_9416_cov_11.0002, whole genome shotgun sequence (9416 bp)
Overview 1 RT 1: 3-5458 bp Neighborhood of RT #1 [3, 6348] RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 3-260 bp Feature: gene Location: 257-1441 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401-983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 401-983 bp Feature: gene Location: 1998-3542 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2415-2868 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2 415-2 868 bp Feature: gene Location: 3708-3968 bp Feature: gene Location: 4030-6348 bp Feature: domain Description: Phage_GPA Location: 4471-5458 bp Feature: domain Description: Phage_GPA Location: 4471-5458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)