myRT

myRT report for GCA_902807285.1_PBIO1947

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Seq: CADCYY010000050.1 Escherichia coli strain PBIO1947 genome assembly, contig: NODE_50_length_24962_cov_26.6316, whole genome shotgun sequence (24962 bp)
Overview 1 RT 1: 1767-5903 bp Neighborhood of RT #1 [1767, 5903] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1767-2000 bp Feature: domain Description: DUF905 Location: 1797-1995 bp Feature: domain Description: DUF905 Location: 1 797-1 995 bp Feature: gene Location: 2068-2520 bp Feature: domain Description: PRK13732 Location: 2074-2518 bp Feature: domain Description: PRK1 3732 Location: 2074-251 8 bp Feature: gene Location: 2715-4616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982-3813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2982-381 3 bp Feature: domain Description: Intron_maturas2 Location: 3927-4185 bp Feature: domain Description: Intron_maturas2 Location: 3927-41 85 bp Feature: domain Description: HNHc Note: nucleases Location: 4359-4521 bp Feature: domain Description: HNHc Note: nucleases Location: 4359-4521 bp Feature: gene Location: 5358-5561 bp Feature: gene Location: 5613-5903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CADCYY010000056.1 Escherichia coli strain PBIO1947 genome assembly, contig: NODE_56_length_19181_cov_24.6586, whole genome shotgun sequence (19181 bp)
Overview 1 RT 1: 14323-19082 bp Neighborhood of RT #1 [14323, 19180] PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Feature: gene Location: 14323-14733 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 14395-14707 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 14395-14707 bp Feature: gene Location: 14897-15052 bp Feature: gene Location: 15275-17293 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 15848-16301 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 15848-16301 bp Feature: gene Location: 17284-18561 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 17572-18067 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 17572 -18067 bp Feature: gene Location: 18956-19180 bp Feature: domain Description: PRK09678 Location: 18974-19082 bp Feature: domain Description: PRK09678 Location: 18974-19082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: CADCYY010000089.1 Escherichia coli strain PBIO1947 genome assembly, contig: NODE_89_length_4457_cov_20.009, whole genome shotgun sequence (4457 bp)
Overview 1 RT 1: 927-4054 bp Neighborhood of RT #1 [927, 4054] Arm-DNA-bind_3 RVT-Retrons Feature: gene Location: 927-1229 bp Feature: domain Description: Arm-DNA-bind_3 Location: 936-1188 bp Feature: domain Description: Arm-DNA-bind_3 Location: 93 6-1188 bp Feature: gene Location: 1413-1658 bp Feature: gene Location: 1684-2616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1786-2380 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1786-23 80 bp Feature: gene Location: 2618-3604 bp Feature: gene Location: 3905-4054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons

Seq: CADCYY010000102.1 Escherichia coli strain PBIO1947 genome assembly, contig: NODE_102_length_2524_cov_95.5582, whole genome shotgun sequence (2524 bp)
Overview 1 RT 1: 1-2062 bp Neighborhood of RT #1 [1, 2307] PHA02517 RVT-GII GIIM Feature: gene Location: 1-192 bp Feature: domain Description: PHA02517 Location: 4-127 bp Feature: domain Description: PHA02517 Location: 4 -127 bp Feature: gene Location: 784-2307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1057-1789 bp Feature: domain Description: GIIM Note: maturase Location: 1864-2062 bp Feature: domain Description: GIIM Note: maturase Location: 1864 -2062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)