myRT

myRT report for GCA_902809905.1_SC400

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Seq: CADDWT010000001.1 Escherichia coli isolate SC400 genome assembly, contig: contig_2_pilon, whole genome shotgun sequence (4924724 bp)
Overview 1 RT 1: 3719924-3723960 bp Neighborhood of RT #1 [3719924, 3723962] RVT-Retrons COG3943 PRK15011 Feature: gene Location: 3719924-3720058 bp Feature: gene Location: 3720070-3721020 bp Feature: gene Location: 3721007-3721957 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3721106-3721697 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3721 1 06-3721 697 bp Feature: gene Location: 3722250-3722396 bp Feature: domain Description: COG3943 Location: 3722253-3722352 bp Feature: domain Description: COG3943 Location: 3722253-3722352 bp Feature: gene Location: 3722778-3723962 bp Feature: domain Description: PRK15011 Location: 3722787-3723960 bp Feature: domain Description: PRK1 501 1 Location: 3722787-3723960 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)

Seq: CADDWT010000002.1 Escherichia coli isolate SC400 genome assembly, contig: contig_3_pilon, whole genome shotgun sequence (140964 bp)
Overview 1 RT 1: 116595-124469 bp Neighborhood of RT #1 [116595, 124469] PRK13698 RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C RVT_N RVT-GII GIIM HNHc Feature: gene Location: 116595-117566 bp Feature: domain Description: PRK13698 Location: 116598-117561 bp Feature: domain Description: PRK13698 Location: 116598-117561 bp Feature: gene Location: 118899-119039 bp Feature: gene Location: 119061-120785 bp Feature: RT Description: RVT_N Location: 119118-119355 bp Feature: RT Description: RVT_N Location: 119118-119355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119406-120054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 119406-12 0054 bp Feature: domain Description: YkfC Location: 120186-120342 bp Feature: domain Description: YkfC Location: 12 0186-12 0342 bp Feature: domain Description: HNHc Note: nucleases Location: 120570-120729 bp Feature: domain Description: HNHc Note: nucleases Location: 12 0570-12 072 9 bp Feature: gene Location: 120862-121035 bp Feature: gene Location: 121137-121730 bp Feature: domain Description: DUF1281 Location: 121143-121458 bp Feature: domain Description: DUF12 81 Location: 12 1143-12 1458 bp Feature: domain Description: DUF1281_C Location: 121464-121677 bp Feature: domain Description: DUF12 81_C Location: 12 1464-12 1677 bp Feature: gene Location: 121756-122067 bp Feature: gene Location: 122296-123996 bp Feature: RT Description: RVT_N Location: 122350-122593 bp Feature: RT Description: RVT_N Location: 12 2 350-12 2 593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 122638-123274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 638-12 32 74 bp Feature: domain Description: GIIM Note: maturase Location: 123325-123559 bp Feature: domain Description: GIIM Note: maturase Location: 12 332 5-12 3559 bp Feature: domain Description: HNHc Note: nucleases Location: 123790-123940 bp Feature: domain Description: HNHc Note: nucleases Location: 12 3790-12 3940 bp Feature: gene Location: 124033-124161 bp Feature: gene Location: 124212-124469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13698 (ParB/RepB/Spo0J family plasmid partition protein), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), GIIM (pfam08388)