myRT

myRT report for GCA_902809955.1_SC307

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Seq: CADDWU010000001.1 Escherichia coli isolate SC307 genome assembly, contig: contig_1_pilon, whole genome shotgun sequence (4892106 bp)
Overview 1 RT 1: 4515509-4519546 bp Neighborhood of RT #1 [4515509, 4519548] RVT-Retrons COG3943 PRK15011 Feature: gene Location: 4515509-4515643 bp Feature: gene Location: 4515655-4516605 bp Feature: gene Location: 4516592-4517542 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4516691-4517282 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 451 6691 -451 7282 bp Feature: gene Location: 4517836-4517982 bp Feature: domain Description: COG3943 Location: 4517839-4517938 bp Feature: domain Description: COG3943 Location: 451 7839-451 7938 bp Feature: gene Location: 4518364-4519548 bp Feature: domain Description: PRK15011 Location: 4518373-4519546 bp Feature: domain Description: PRK1 501 1 Location: 451 8373-451 9546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3943 (Uncharacterized conserved protein ), PRK15011 (sugar efflux transporter SetB)

Seq: CADDWU010000004.1 Escherichia coli isolate SC307 genome assembly, contig: contig_4_pilon, whole genome shotgun sequence (174320 bp)
Overview 1 RT 1: 3-3253 bp 2 RT 2: 131574-133851 bp 3 RT 3: 141337-144711 bp 4 RT 4: 149130-156813 bp Neighborhood of RT #1 [3, 3253] PRK10954 LuxR_C_like RVT-UG4 Neighborhood of RT #2 [131574, 134183] Rop RVT-GII COG4584 Neighborhood of RT #3 [141337, 144711] DUF1380 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #4 [149130, 156815] PRK09738 RVT-GII GIIM HNHc DDE_Tnp_IS66 DDE_Tnp_IS66_C COG3436 TnpB_IS66 HTH_23 InsE RVT_N RVT-GII PRK09183 Feature: gene Location: 3-548 bp Feature: domain Description: PRK10954 Location: 9-543 bp Feature: domain Description: PRK10954 Location: 9-543 bp Feature: gene Location: 586-885 bp Feature: domain Description: LuxR_C_like Location: 661-814 bp Feature: domain Description: LuxR_C_like Location: 661-814 bp Feature: gene Location: 911-1909 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1250-1694 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12 50-1694 bp Feature: gene Location: 1942-2922 bp Feature: gene Location: 3125-3253 bp Feature: gene Location: 131574-131753 bp Feature: domain Description: Rop Location: 131586-131637 bp Feature: domain Description: Rop Location: 131586-131637 bp Feature: gene Location: 131891-132037 bp Feature: gene Location: 132333-132638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132336-132588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132 336-132 588 bp Feature: gene Location: 132669-132929 bp Feature: gene Location: 133011-134183 bp Feature: domain Description: COG4584 Location: 133014-133851 bp Feature: domain Description: COG4584 Location: 133014-133851 bp Feature: gene Location: 141337-141693 bp Feature: domain Description: DUF1380 Location: 141352-141583 bp Feature: domain Description: DUF1380 Location: 141352 -141583 bp Feature: gene Location: 141748-142002 bp Feature: gene Location: 142195-143862 bp Feature: domain Description: RVT_N Location: 142243-142480 bp Feature: domain Description: RVT_N Location: 142 2 43-142 480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142531-143173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 531-143173 bp Feature: domain Description: GIIM Note: maturase Location: 143224-143458 bp Feature: domain Description: GIIM Note: maturase Location: 1432 2 4-143458 bp Feature: domain Description: HNHc Note: nucleases Location: 143668-143827 bp Feature: domain Description: HNHc Note: nucleases Location: 143668-14382 7 bp Feature: gene Location: 144142-144324 bp Feature: gene Location: 144436-144711 bp Feature: gene Location: 149130-149648 bp Feature: gene Location: 149767-149982 bp Feature: domain Description: PRK09738 Location: 149827-149980 bp Feature: domain Description: PRK09738 Location: 14982 7-149980 bp Feature: gene Location: 150391-151248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150394-150559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150394-150559 bp Feature: domain Description: GIIM Note: maturase Location: 150610-150844 bp Feature: domain Description: GIIM Note: maturase Location: 150610-150844 bp Feature: domain Description: HNHc Note: nucleases Location: 151054-151213 bp Feature: domain Description: HNHc Note: nucleases Location: 151054-1512 13 bp Feature: gene Location: 151283-151831 bp Feature: domain Description: DDE_Tnp_IS66 Location: 151286-151676 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1512 86-151676 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 151697-151808 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 151697-151808 bp Feature: gene Location: 151846-152853 bp Feature: domain Description: COG3436 Location: 152158-152629 bp Feature: domain Description: COG3436 Location: 152 158-152 62 9 bp Feature: gene Location: 152873-153166 bp Feature: domain Description: TnpB_IS66 Location: 152876-153137 bp Feature: domain Description: TnpB_IS66 Location: 152 876-153137 bp Feature: gene Location: 153221-153898 bp Feature: domain Description: HTH_23 Location: 153281-153392 bp Feature: domain Description: HTH_2 3 Location: 1532 81-153392 bp Feature: domain Description: InsE Location: 153524-153878 bp Feature: domain Description: InsE Location: 15352 4-153878 bp Feature: gene Location: 153935-154765 bp Feature: domain Description: RVT_N Location: 153983-154220 bp Feature: domain Description: RVT_N Location: 153983-1542 2 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 154271-154736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542 71-154736 bp Feature: gene Location: 155045-155227 bp Feature: gene Location: 156036-156815 bp Feature: domain Description: PRK09183 Location: 156042-156813 bp Feature: domain Description: PRK09183 Location: 156042 -156813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10954 (thiol:disulfide interchange protein DsbA), LuxR_C_like (cd06170), RVT-UG4, Rop (pfam01815), RVT-GII, COG4584 (Transposase ), DUF1380 (pfam07128), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)
PRK09738 (small toxic polypeptide; Provisional), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3436 (Transposase ), TnpB_IS66 (pfam05717), HTH_23 (pfam13384), InsE (COG2963), PRK09183 (transposase/IS protein; Provisional)