myRT

myRT report for GCA_902810155.1_SC464

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Seq: CADDXL010000001.1 Escherichia coli isolate SC464 genome assembly, contig: contig_1_pilon, whole genome shotgun sequence (114361 bp)
Overview 1 RT 1: 11188-13758 bp Neighborhood of RT #1 [11188, 13775] RVT-GII GIIM Peptidase_S6 Peptidase_S6 Feature: gene Location: 11188-11409 bp Feature: gene Location: 11406-11645 bp Feature: gene Location: 11724-12776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11742-12354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 742-1 2354 bp Feature: domain Description: GIIM Note: maturase Location: 12414-12618 bp Feature: domain Description: GIIM Note: maturase Location: 1 241 4-1 261 8 bp Feature: gene Location: 12992-13375 bp Feature: domain Description: Peptidase_S6 Location: 13034-13349 bp Feature: domain Description: Peptidase_S6 Location: 1 3034-1 3349 bp Feature: gene Location: 13482-13775 bp Feature: domain Description: Peptidase_S6 Location: 13506-13758 bp Feature: domain Description: Peptidase_S6 Location: 1 3506-1 3758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395)

Seq: CADDXL010000002.1 Escherichia coli isolate SC464 genome assembly, contig: contig_2_pilon, whole genome shotgun sequence (5023622 bp)
Overview 1 RT 1: 880343-884223 bp Neighborhood of RT #1 [880343, 884228] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 880343-881059 bp Feature: domain Description: rph Location: 880346-881054 bp Feature: domain Description: rph Location: 880346-881054 bp Feature: gene Location: 881110-881766 bp Feature: domain Description: pyrE Location: 881128-881761 bp Feature: domain Description: pyrE Location: 88112 8-881761 bp Feature: gene Location: 882062-883021 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 882197-882746 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 882 197-882 746 bp Feature: gene Location: 883067-883663 bp Feature: domain Description: slmA Location: 883073-883649 bp Feature: domain Description: slmA Location: 883073-883649 bp Feature: gene Location: 883770-884228 bp Feature: domain Description: dut Location: 883776-884223 bp Feature: domain Description: dut Location: 883776-8842 2 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)