myRT

myRT report for GCA_902812655.1_Cppng1

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Seq: CADDZT010000014.1 Candidatus Frankia meridionalis strain Cppng1 genome assembly, contig: scaffold00022, whole genome shotgun sequence (79059 bp)
Overview 1 RT 1: 72331-76564 bp Neighborhood of RT #1 [72331, 77232] DUF433 Cas2_I_II_III RVT-CRISPR cas1_CYANO Cmr1 Cmr1 Feature: gene Location: 72331-72561 bp Feature: domain Description: DUF433 Location: 72349-72514 bp Feature: domain Description: DUF433 Location: 72349-7251 4 bp Feature: gene Location: 73373-73654 bp Feature: domain Description: Cas2_I_II_III Location: 73382-73616 bp Feature: domain Description: Cas2_I_II_III Location: 73382-7361 6 bp Feature: gene Location: 73677-74804 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 73884-74031 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 73884-74031 bp Feature: domain Description: cas1_CYANO Location: 74040-74793 bp Feature: domain Description: cas1 _CYANO Location: 74040-74793 bp Feature: gene Location: 75554-75967 bp Feature: gene Location: 75997-77232 bp Feature: domain Description: Cmr1 Location: 76006-76162 bp Feature: domain Description: Cmr1 Location: 76006-761 62 bp Feature: domain Description: Cmr1 Location: 76483-76564 bp Feature: domain Description: Cmr1 Location: 76483-76564 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF433 (pfam04255), Cas2_I_II_III (cl11442), RVT-CRISPR, cas1_CYANO (TIGR04093), Cmr1 (COG1367)

Seq: CADDZT010000032.1 Candidatus Frankia meridionalis strain Cppng1 genome assembly, contig: scaffold00114, whole genome shotgun sequence (5317 bp)
Overview 1 RT 1: 959-5315 bp Neighborhood of RT #1 [959, 5315] GIIM RVT-GII Intron_maturas2 HNHc Feature: gene Location: 959-1183 bp Feature: gene Location: 1973-2419 bp Feature: domain Description: GIIM Note: maturase Location: 2126-2357 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 6-2 357 bp Feature: gene Location: 3231-5156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3669-4422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3669-442 2 bp Feature: domain Description: Intron_maturas2 Location: 4536-4758 bp Feature: domain Description: Intron_maturas2 Location: 4536-4758 bp Feature: domain Description: HNHc Note: nucleases Location: 4932-5115 bp Feature: domain Description: HNHc Note: nucleases Location: 4932 -5115 bp Feature: gene Location: 5190-5315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: CADDZT010000040.1 Candidatus Frankia meridionalis strain Cppng1 genome assembly, contig: scaffold00076, whole genome shotgun sequence (23248 bp)
Overview 1 RT 1: 5108-8092 bp Neighborhood of RT #1 [5108, 8172] RVT-GII RVT-GII DDE_Tnp_ISL3 Feature: gene Location: 5108-5308 bp Feature: gene Location: 5394-5678 bp Feature: gene Location: 5688-5975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5769-5952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5769-5952 bp Feature: gene Location: 6023-6502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6026-6401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6026-6401 bp Feature: gene Location: 6607-7515 bp Feature: gene Location: 7546-8172 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 7552-8092 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 7552-8092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_Tnp_ISL3 (pfam01610)

Seq: CADDZT010000076.1 Candidatus Frankia meridionalis strain Cppng1 genome assembly, contig: scaffold00110, whole genome shotgun sequence (5203 bp)
Overview 1 RT 1: 2-4918 bp Neighborhood of RT #1 [2, 4947] RVT-GII GIIM IS285 RVT-GII GIIM RVT-GII Gp49 HTH_XRE Feature: gene Location: 2-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-236 bp Feature: domain Description: GIIM Note: maturase Location: 314-452 bp Feature: domain Description: GIIM Note: maturase Location: 314 -4 52 bp Feature: gene Location: 541-1872 bp Feature: domain Description: IS285 Location: 682-1858 bp Feature: domain Description: IS285 Location: 682-1858 bp Feature: gene Location: 2055-2633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061-2202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061-2202 bp Feature: domain Description: GIIM Note: maturase Location: 2274-2481 bp Feature: domain Description: GIIM Note: maturase Location: 2274 -24 81 bp Feature: gene Location: 2661-3539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3012-3492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3012-34 92 bp Feature: gene Location: 4158-4658 bp Feature: domain Description: Gp49 Location: 4335-4587 bp Feature: domain Description: Gp4 9 Location: 4 335-4 587 bp Feature: gene Location: 4693-4947 bp Feature: domain Description: HTH_XRE Location: 4756-4918 bp Feature: domain Description: HTH_XRE Location: 4 756-4 918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS285 (COG3328), Gp49 (pfam05973), HTH_XRE (smart00530)