myRT

myRT report for GCA_902827015.1_RBC072

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Seq: CADEGZ010000069.1 uncultured proteobacterium isolate Proteobacteria sp. RBC072 genome assembly, contig: MAG072_69, whole genome shotgun sequence (11927 bp)
Overview 1 RT 1: 406-3676 bp Neighborhood of RT #1 [406, 3676] REC RVT-GII GIIM RVT_N RVT-GII Feature: gene Location: 406-930 bp Feature: gene Location: 933-1346 bp Feature: domain Description: REC Location: 981-1311 bp Feature: domain Description: REC Location: 981 -1 31 1 bp Feature: gene Location: 1555-2496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1561-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 561 -1 906 bp Feature: domain Description: GIIM Note: maturase Location: 1960-2194 bp Feature: domain Description: GIIM Note: maturase Location: 1 960-21 94 bp Feature: gene Location: 2505-3128 bp Feature: RT Description: RVT_N Location: 2577-2820 bp Feature: RT Description: RVT_N Location: 2577-2820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2865-3090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2865-3090 bp Feature: gene Location: 3136-3489 bp Feature: gene Location: 3488-3676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), REC (smart00448)

Seq: CADEGZ010000150.1 uncultured proteobacterium isolate Proteobacteria sp. RBC072 genome assembly, contig: MAG072_150, whole genome shotgun sequence (5145 bp)
Overview 1 RT 1: 474-5143 bp Neighborhood of RT #1 [474, 5143] PinE Zn_ribbon_recom Recombinase HTH_MerR-SF RVT-GII PRK06642 Feature: gene Location: 474-2564 bp Feature: domain Description: PinE Location: 519-1206 bp Feature: domain Description: PinE Location: 519-12 06 bp Feature: domain Description: Zn_ribbon_recom Location: 1473-1650 bp Feature: domain Description: Zn_ribbon_recom Location: 1473-1650 bp Feature: domain Description: Recombinase Location: 2187-2295 bp Feature: domain Description: Recombinase Location: 2 187-2 2 95 bp Feature: domain Description: HTH_MerR-SF Location: 2346-2433 bp Feature: domain Description: HTH_MerR-SF Location: 2 346-2 433 bp Feature: gene Location: 3210-3572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3510-3558 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3510-3558 bp Feature: gene Location: 4131-4574 bp Feature: domain Description: PRK06642 Location: 4134-4572 bp Feature: domain Description: PRK06642 Location: 4134-4572 bp Feature: gene Location: 4592-5143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK06642 (single-stranded DNA-binding protein; Provisional), PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), HTH_MerR-SF (cl02600)

Seq: CADEGZ010000224.1 uncultured proteobacterium isolate Proteobacteria sp. RBC072 genome assembly, contig: MAG072_224, whole genome shotgun sequence (2599 bp)
Overview 1 RT 1: 2-2398 bp Neighborhood of RT #1 [2, 2398] MFS_ShiA_like RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-226 bp Feature: domain Description: MFS_ShiA_like Location: 23-227 bp Feature: domain Description: MFS_ShiA_like Location: 23 -227 bp Feature: gene Location: 294-1994 bp Feature: RT Description: RVT_N Location: 312-552 bp Feature: RT Description: RVT_N Location: 3 12-552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 600-1299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 600-1299 bp Feature: domain Description: GIIM Note: maturase Location: 1377-1593 bp Feature: domain Description: GIIM Note: maturase Location: 13 77-1593 bp Feature: domain Description: HNHc Note: nucleases Location: 1812-1947 bp Feature: domain Description: HNHc Note: nucleases Location: 1812-1947 bp Feature: gene Location: 2219-2398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_ShiA_like (cd17369), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CADEGZ010000225.1 uncultured proteobacterium isolate Proteobacteria sp. RBC072 genome assembly, contig: MAG072_225, whole genome shotgun sequence (2578 bp)
Overview 1 RT 1: 2-2423 bp Neighborhood of RT #1 [2, 2575] RVT-GII Condensation Recombinase Zn_ribbon_recom Feature: gene Location: 2-883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 425-878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 25-878 bp Feature: gene Location: 1292-1636 bp Feature: gene Location: 1643-2575 bp Feature: domain Description: Condensation Location: 1658-1844 bp Feature: domain Description: Condensation Location: 1658-184 4 bp Feature: domain Description: Recombinase Location: 1844-2192 bp Feature: domain Description: Recombinase Location: 184 4 -2192 bp Feature: domain Description: Zn_ribbon_recom Location: 2234-2423 bp Feature: domain Description: Zn_ribbon_recom Location: 2234 -24 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Condensation (pfam00668), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT-GII