myRT

myRT report for GCA_902829455.1_ASM90282945v1

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Seq: CADEQL010000011.1 TPA_asm: Burkholderia vietnamiensis strain BCC0029 genome assembly, contig: B_vietnamiensis_BCC0029_ERS784991_SC_contig000011, whole genome shotgun sequence (211584 bp)
Overview 1 RT 1: 44643-51148 bp Neighborhood of RT #1 [44643, 51148] DDE_Tnp_1 DUF3732 RVT-Retrons Histone_HNS Feature: gene Location: 44643-45278 bp Feature: domain Description: DDE_Tnp_1 Location: 44772-45237 bp Feature: domain Description: DDE_Tnp_1 Location: 44772-45237 bp Feature: gene Location: 45447-47609 bp Feature: domain Description: DUF3732 Location: 47001-47553 bp Feature: domain Description: DUF3732 Location: 47001 -47553 bp Feature: gene Location: 48099-49529 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48105-48561 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 481 05-48561 bp Feature: gene Location: 50025-50327 bp Feature: domain Description: Histone_HNS Location: 50049-50307 bp Feature: domain Description: Histone_HNS Location: 50049-50307 bp Feature: gene Location: 51017-51148 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), DUF3732 (pfam12532), RVT-Retrons, Histone_HNS (pfam00816)

Seq: CADEQL010000021.1 TPA_asm: Burkholderia vietnamiensis strain BCC0029 genome assembly, contig: B_vietnamiensis_BCC0029_ERS784991_SC_contig000021, whole genome shotgun sequence (113761 bp)
Overview 1 RT 1: 150-3655 bp Neighborhood of RT #1 [150, 3813] RVT-GII GIIM Feature: gene Location: 150-881 bp Feature: gene Location: 2620-3813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2779-3391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 779-3391 bp Feature: domain Description: GIIM Note: maturase Location: 3451-3655 bp Feature: domain Description: GIIM Note: maturase Location: 3451-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADEQL010000023.1 TPA_asm: Burkholderia vietnamiensis strain BCC0029 genome assembly, contig: B_vietnamiensis_BCC0029_ERS784991_SC_contig000023, whole genome shotgun sequence (109147 bp)
Overview 1 RT 1: 60231-66286 bp Neighborhood of RT #1 [60231, 66342] ilvH PRK05479 RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 60231-60722 bp Feature: domain Description: ilvH Location: 60234-60711 bp Feature: domain Description: ilvH Location: 6023 4-60711 bp Feature: gene Location: 60828-61844 bp Feature: domain Description: PRK05479 Location: 60831-61812 bp Feature: domain Description: PRK05479 Location: 6083 1-61812 bp Feature: gene Location: 63383-64693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63386-63974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 3 86-63 974 bp Feature: domain Description: GIIM Note: maturase Location: 64025-64259 bp Feature: domain Description: GIIM Note: maturase Location: 64025-64259 bp Feature: domain Description: HNHc Note: nucleases Location: 64490-64643 bp Feature: domain Description: HNHc Note: nucleases Location: 64490-64643 bp Feature: gene Location: 64810-65454 bp Feature: domain Description: PRK05305 Location: 64834-65446 bp Feature: domain Description: PRK053 05 Location: 6483 4-65446 bp Feature: gene Location: 65470-66342 bp Feature: domain Description: PssA Location: 65608-66286 bp Feature: domain Description: PssA Location: 65608-66286 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: CADEQL010000024.1 TPA_asm: Burkholderia vietnamiensis strain BCC0029 genome assembly, contig: B_vietnamiensis_BCC0029_ERS784991_SC_contig000024, whole genome shotgun sequence (108228 bp)
Overview 1 RT 1: 90261-91597 bp Neighborhood of RT #1 [90261, 91923] RVT-Retrons Feature: gene Location: 90261-90461 bp Feature: gene Location: 90520-90717 bp Feature: gene Location: 90913-91923 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91051-91597 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 91051-91597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CADEQL010000046.1 TPA_asm: Burkholderia vietnamiensis strain BCC0029 genome assembly, contig: B_vietnamiensis_BCC0029_ERS784991_SC_contig000046, whole genome shotgun sequence (31981 bp)
Overview 1 RT 1: 16161-21206 bp Neighborhood of RT #1 [16161, 21217] MFS_ExuT_GudP_like Ga5DH-like_SDR_c RVT-GII GIIM PHA02517 InsE Feature: gene Location: 16161-17471 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 16203-17406 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 16203-17406 bp Feature: gene Location: 17477-18205 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 17504-18200 bp Feature: domain Description: Ga5 DH-like_SDR_c Location: 175 04-18200 bp Feature: gene Location: 18486-19733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18489-19065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18489-19065 bp Feature: domain Description: GIIM Note: maturase Location: 19116-19350 bp Feature: domain Description: GIIM Note: maturase Location: 19116-1935 0 bp Feature: gene Location: 19980-20834 bp Feature: domain Description: PHA02517 Location: 19983-20811 bp Feature: domain Description: PHA025 17 Location: 19983-20811 bp Feature: gene Location: 20891-21217 bp Feature: domain Description: InsE Location: 20897-21206 bp Feature: domain Description: InsE Location: 20897-21206 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_ExuT_GudP_like (cd17319), Ga5DH-like_SDR_c (cd05347), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)