myRT

myRT report for GCA_902829715.1_ASM90282971v1

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Seq: CADERM010000002.1 TPA_asm: Burkholderia sp. BCC1642 genome assembly, contig: Burkholderia_sp._BCC1642_NODE_2_length_437841_cov_11.9753_pilon, whole genome shotgun sequence (437841 bp)
Overview 1 RT 1: 129294-138455 bp Neighborhood of RT #1 [129294, 138484] yhbS PRK05297 RVT-GII GIIM HNHc PRK00711 Feature: gene Location: 129294-129836 bp Feature: domain Description: yhbS Location: 129330-129828 bp Feature: domain Description: yhbS Location: 1 29330-1 29828 bp Feature: gene Location: 129836-133900 bp Feature: domain Description: PRK05297 Location: 129851-133898 bp Feature: domain Description: PRK05297 Location: 1 29851 -1 33898 bp Feature: gene Location: 134052-135350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134055-134643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 34055-1 34643 bp Feature: domain Description: GIIM Note: maturase Location: 134697-134928 bp Feature: domain Description: GIIM Note: maturase Location: 1 34697-1 34928 bp Feature: domain Description: HNHc Note: nucleases Location: 135153-135312 bp Feature: domain Description: HNHc Note: nucleases Location: 1 351 53-1 3531 2 bp Feature: gene Location: 136868-137101 bp Feature: gene Location: 136970-138484 bp Feature: domain Description: PRK00711 Location: 137183-138455 bp Feature: domain Description: PRK0071 1 Location: 1 371 83-1 38455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT yhbS (COG3153), PRK05297 (phosphoribosylformylglycinamidine synthase; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK00711 (D-amino acid dehydrogenase)

Seq: CADERM010000022.1 TPA_asm: Burkholderia sp. BCC1642 genome assembly, contig: Burkholderia_sp._BCC1642_NODE_22_length_124451_cov_11.9834_pilon, whole genome shotgun sequence (124451 bp)
Overview 1 RT 1: 75526-81567 bp Neighborhood of RT #1 [75526, 81623] ilvH PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 75526-76017 bp Feature: domain Description: ilvH Location: 75529-76006 bp Feature: domain Description: ilvH Location: 7552 9-76006 bp Feature: gene Location: 76113-77129 bp Feature: domain Description: PRK05479 Location: 76116-77097 bp Feature: domain Description: PRK05479 Location: 76116-77097 bp Feature: gene Location: 78412-79977 bp Feature: RT Description: RVT_N Location: 78415-78565 bp Feature: RT Description: RVT_N Location: 78415-78565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78610-79258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78610-792 58 bp Feature: domain Description: GIIM Note: maturase Location: 79309-79543 bp Feature: domain Description: GIIM Note: maturase Location: 79309-79543 bp Feature: domain Description: HNHc Note: nucleases Location: 79774-79927 bp Feature: domain Description: HNHc Note: nucleases Location: 79774-7992 7 bp Feature: gene Location: 80094-80738 bp Feature: domain Description: PRK05305 Location: 80118-80730 bp Feature: domain Description: PRK05305 Location: 80118-80730 bp Feature: gene Location: 80754-81623 bp Feature: domain Description: PssA Location: 80889-81567 bp Feature: domain Description: PssA Location: 80889-81567 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: CADERM010000031.1 TPA_asm: Burkholderia sp. BCC1642 genome assembly, contig: Burkholderia_sp._BCC1642_NODE_31_length_79433_cov_15.9462_pilon, whole genome shotgun sequence (79433 bp)
Overview 1 RT 1: 18593-22469 bp Neighborhood of RT #1 [18593, 22540] dTDP_HR_like_SDR_e FIN RVT-Retrons Histone_HNS Feature: gene Location: 18593-19537 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 18611-19496 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 18611-19496 bp Feature: gene Location: 19745-20266 bp Feature: domain Description: FIN Location: 19874-20231 bp Feature: domain Description: FIN Location: 19874-2023 1 bp Feature: gene Location: 20389-21573 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20965-21454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20965-21454 bp Feature: gene Location: 21573-21842 bp Feature: gene Location: 22211-22540 bp Feature: domain Description: Histone_HNS Location: 22235-22469 bp Feature: domain Description: Histone_HNS Location: 2223 5-22469 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dTDP_HR_like_SDR_e (cd05254), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816)

Seq: CADERM010000233.1 TPA_asm: Burkholderia sp. BCC1642 genome assembly, contig: Burkholderia_sp._BCC1642_NODE_233_length_1916_cov_27.2663_pilon, whole genome shotgun sequence (1916 bp)
Overview 1 RT 1: 76-1913 bp Neighborhood of RT #1 [76, 1913] RVT-GII Feature: gene Location: 76-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 487-1174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 87-1174 bp Feature: gene Location: 1650-1913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII