myRT

myRT report for GCA_902829745.1_ASM90282974v1

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Seq: CADERL010000001.1 TPA_asm: Paraburkholderia phenazinium strain BCC1873 genome assembly, contig: Burkholderia_phenazinium_BCC1873_NODE_1_length_1015775_cov_10.7737_pilon, whole genome shotgun sequence (1015775 bp)
Overview 1 RT 1: 279582-285437 bp Neighborhood of RT #1 [279582, 285442] DUF4194 DUF3375 RVT-Retrons GlxA GyrI-like Feature: gene Location: 279582-280229 bp Feature: domain Description: DUF4194 Location: 279645-280155 bp Feature: domain Description: DUF41 94 Location: 279645-2801 55 bp Feature: gene Location: 280232-281767 bp Feature: domain Description: DUF3375 Location: 280346-281759 bp Feature: domain Description: DUF3375 Location: 280346-281 759 bp Feature: gene Location: 281879-283330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 282425-283064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 282425-283064 bp Feature: gene Location: 283656-284234 bp Feature: gene Location: 284588-285442 bp Feature: domain Description: GlxA Location: 284618-284933 bp Feature: domain Description: GlxA Location: 28461 8-284933 bp Feature: domain Description: GyrI-like Location: 284987-285437 bp Feature: domain Description: GyrI-like Location: 284987-285437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4194 (pfam13835), DUF3375 (pfam11855), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445)

Seq: CADERL010000004.1 TPA_asm: Paraburkholderia phenazinium strain BCC1873 genome assembly, contig: Burkholderia_phenazinium_BCC1873_NODE_4_length_430519_cov_9.112_pilon, whole genome shotgun sequence (430519 bp)
Overview 1 RT 1: 380199-386717 bp Neighborhood of RT #1 [380199, 386717] TniQ Tra8 Tra8 Tra8 RVT-GII GIIM HTH_3 Feature: gene Location: 380199-381569 bp Feature: domain Description: TniQ Location: 380226-380571 bp Feature: domain Description: TniQ Location: 3802 2 6-380571 bp Feature: gene Location: 381812-383005 bp Feature: domain Description: Tra8 Location: 381866-382133 bp Feature: domain Description: Tra8 Location: 381866-382 133 bp Feature: domain Description: Tra8 Location: 382229-382598 bp Feature: domain Description: Tra8 Location: 382 2 2 9-382 598 bp Feature: domain Description: Tra8 Location: 382658-382991 bp Feature: domain Description: Tra8 Location: 382 658-382 991 bp Feature: gene Location: 383315-384847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383588-384326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 383588-38432 6 bp Feature: domain Description: GIIM Note: maturase Location: 384422-384599 bp Feature: domain Description: GIIM Note: maturase Location: 38442 2 -384599 bp Feature: gene Location: 385812-386060 bp Feature: domain Description: HTH_3 Location: 385833-385941 bp Feature: domain Description: HTH_3 Location: 385833-385941 bp Feature: gene Location: 386304-386717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TniQ (pfam06527), Tra8 (COG2826), RVT-GII, GIIM (pfam08388), HTH_3 (pfam01381)

Seq: CADERL010000013.1 TPA_asm: Paraburkholderia phenazinium strain BCC1873 genome assembly, contig: Burkholderia_phenazinium_BCC1873_NODE_13_length_252997_cov_10.0224_pilon, whole genome shotgun sequence (252997 bp)
Overview 1 RT 1: 49985-56133 bp Neighborhood of RT #1 [49985, 56144] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 ilvH Feature: gene Location: 49985-50854 bp Feature: domain Description: PssA Location: 50117-50798 bp Feature: domain Description: PssA Location: 50117-50798 bp Feature: gene Location: 50878-51522 bp Feature: domain Description: PRK05305 Location: 50902-51514 bp Feature: domain Description: PRK053 05 Location: 50902-51514 bp Feature: gene Location: 51645-53246 bp Feature: domain Description: RVT_N Location: 51648-51846 bp Feature: domain Description: RVT_N Location: 51648-51846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51891-52539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51891-5253 9 bp Feature: domain Description: GIIM Note: maturase Location: 52590-52824 bp Feature: domain Description: GIIM Note: maturase Location: 52590-52824 bp Feature: domain Description: HNHc Note: nucleases Location: 53067-53208 bp Feature: domain Description: HNHc Note: nucleases Location: 53 067-53 208 bp Feature: gene Location: 54513-55529 bp Feature: domain Description: PRK05479 Location: 54516-55497 bp Feature: domain Description: PRK05479 Location: 54516-55497 bp Feature: gene Location: 55653-56144 bp Feature: domain Description: ilvH Location: 55656-56133 bp Feature: domain Description: ilvH Location: 55656-5613 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895)

Seq: CADERL010000037.1 TPA_asm: Paraburkholderia phenazinium strain BCC1873 genome assembly, contig: Burkholderia_phenazinium_BCC1873_NODE_37_length_61791_cov_19.953_pilon, whole genome shotgun sequence (61791 bp)
Overview 1 RT 1: 27831-33064 bp Neighborhood of RT #1 [27831, 33064] rve RVT-UG20 Feature: gene Location: 27831-29723 bp Feature: domain Description: rve Location: 28554-28932 bp Feature: domain Description: rve Location: 28554 -28932 bp Feature: gene Location: 29710-30354 bp Feature: gene Location: 30535-32145 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 30919-31414 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 30919-314 14 bp Feature: gene Location: 32272-32487 bp Feature: gene Location: 32516-33064 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-UG20