myRT

myRT report for GCA_902829795.1_ASM90282979v1

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Seq: CADERB010000017.1 TPA_asm: Burkholderia vietnamiensis strain BCC1878 genome assembly, contig: Burkholderia_megapolitana_BCC1878_NODE_17_length_129098_cov_11.6144_pilon, whole genome shotgun sequence (129098 bp)
Overview 1 RT 1: 111308-112644 bp Neighborhood of RT #1 [111308, 112970] RVT-Retrons Feature: gene Location: 111308-111508 bp Feature: gene Location: 111567-111764 bp Feature: gene Location: 111960-112970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 112098-112644 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 2098-1 1 2644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: CADERB010000019.1 TPA_asm: Burkholderia vietnamiensis strain BCC1878 genome assembly, contig: Burkholderia_megapolitana_BCC1878_NODE_19_length_126538_cov_11.4546_pilon, whole genome shotgun sequence (126538 bp)
Overview 1 RT 1: 77832-83887 bp Neighborhood of RT #1 [77832, 83943] ilvH PRK05479 RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 77832-78323 bp Feature: domain Description: ilvH Location: 77835-78312 bp Feature: domain Description: ilvH Location: 77835-78312 bp Feature: gene Location: 78429-79445 bp Feature: domain Description: PRK05479 Location: 78432-79413 bp Feature: domain Description: PRK05479 Location: 78432 -79413 bp Feature: gene Location: 80984-82294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80987-81575 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80987-81575 bp Feature: domain Description: GIIM Note: maturase Location: 81626-81860 bp Feature: domain Description: GIIM Note: maturase Location: 8162 6-81860 bp Feature: domain Description: HNHc Note: nucleases Location: 82091-82244 bp Feature: domain Description: HNHc Note: nucleases Location: 82 091-82 2 44 bp Feature: gene Location: 82411-83055 bp Feature: domain Description: PRK05305 Location: 82435-83047 bp Feature: domain Description: PRK05305 Location: 82 435-83047 bp Feature: gene Location: 83071-83943 bp Feature: domain Description: PssA Location: 83209-83887 bp Feature: domain Description: PssA Location: 832 09-83887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: CADERB010000058.1 TPA_asm: Burkholderia vietnamiensis strain BCC1878 genome assembly, contig: Burkholderia_megapolitana_BCC1878_NODE_58_length_26442_cov_15.6008_pilon, whole genome shotgun sequence (26442 bp)
Overview 1 RT 1: 20192-26103 bp Neighborhood of RT #1 [20192, 26159] Histone_HNS RVT-Retrons DUF3732 Feature: gene Location: 20192-20563 bp Feature: gene Location: 21279-21581 bp Feature: domain Description: Histone_HNS Location: 21303-21561 bp Feature: domain Description: Histone_HNS Location: 213 03 -21561 bp Feature: gene Location: 22077-23864 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22254-22896 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22254-22896 bp Feature: gene Location: 23997-26159 bp Feature: domain Description: DUF3732 Location: 25551-26103 bp Feature: domain Description: DUF3 73 2 Location: 25551-26103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Histone_HNS (pfam00816), RVT-Retrons, DUF3732 (pfam12532)

Seq: CADERB010000065.1 TPA_asm: Burkholderia vietnamiensis strain BCC1878 genome assembly, contig: Burkholderia_megapolitana_BCC1878_NODE_65_length_20093_cov_15.1452_pilon, whole genome shotgun sequence (20093 bp)
Overview 1 RT 1: 338-3845 bp Neighborhood of RT #1 [338, 3910] RVT-GII GIIM Ga5DH-like_SDR_c MFS_ExuT_GudP_like Feature: gene Location: 338-1585 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341-917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 1-917 bp Feature: domain Description: GIIM Note: maturase Location: 968-1202 bp Feature: domain Description: GIIM Note: maturase Location: 968-1202 bp Feature: gene Location: 1866-2594 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 1893-2589 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 1893-2589 bp Feature: gene Location: 2600-3910 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 2642-3845 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 264 2-384 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ga5DH-like_SDR_c (cd05347), MFS_ExuT_GudP_like (cd17319), RVT-GII, GIIM (pfam08388)

Seq: CADERB010000093.1 TPA_asm: Burkholderia vietnamiensis strain BCC1878 genome assembly, contig: Burkholderia_megapolitana_BCC1878_NODE_93_length_1847_cov_28.4251_pilon, whole genome shotgun sequence (1847 bp)
Overview 1 RT 1: 92-1844 bp Neighborhood of RT #1 [92, 1844] RVT-GII GIIM Feature: gene Location: 92-1462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1040 bp Feature: domain Description: GIIM Note: maturase Location: 1100-1304 bp Feature: domain Description: GIIM Note: maturase Location: 1100-1304 bp Feature: gene Location: 1695-1844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)