myRT

myRT report for GCA_902830115.1_ASM90283011v1

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Seq: CADESQ010000002.1 TPA_asm: Burkholderia ambifaria strain BCC1265 genome assembly, contig: NODE_2_length_666468_cov_12.5024_pilon, whole genome shotgun sequence (666468 bp)
Overview 1 RT 1: 199529-206204 bp Neighborhood of RT #1 [199529, 206204] Trypsin_2 Trypsin_2 RVT-UG17 SLATT_5 Feature: gene Location: 199529-201430 bp Feature: domain Description: Trypsin_2 Location: 199931-200504 bp Feature: domain Description: Trypsin_2 Location: 1 99931 -200504 bp Feature: gene Location: 201435-202604 bp Feature: domain Description: Trypsin_2 Location: 201912-202431 bp Feature: domain Description: Trypsin_2 Location: 201 91 2-202431 bp Feature: gene Location: 203041-204309 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 203146-203743 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 2031 46-203743 bp Feature: gene Location: 204438-205070 bp Feature: domain Description: SLATT_5 Location: 204483-205050 bp Feature: domain Description: SLATT_5 Location: 204483-205050 bp Feature: gene Location: 205350-206204 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Trypsin_2 (pfam13365), RVT-UG17, SLATT_5 (pfam18160)

Seq: CADESQ010000034.1 TPA_asm: Burkholderia ambifaria strain BCC1265 genome assembly, contig: NODE_34_length_28211_cov_12.4226_pilon, whole genome shotgun sequence (28211 bp)
Overview 1 RT 1: 376-6607 bp Neighborhood of RT #1 [376, 6618] FimA RVT-UG4 FimD PRK09926 Feature: gene Location: 376-570 bp Feature: gene Location: 914-1870 bp Feature: domain Description: FimA Location: 1382-1868 bp Feature: domain Description: FimA Location: 1382 -1868 bp Feature: gene Location: 2045-3058 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2405-2849 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2 405-2 849 bp Feature: gene Location: 3055-5709 bp Feature: domain Description: FimD Location: 3085-5593 bp Feature: domain Description: FimD Location: 3085-5593 bp Feature: gene Location: 5818-6618 bp Feature: domain Description: PRK09926 Location: 5893-6607 bp Feature: domain Description: PRK0992 6 Location: 5893-6607 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimA (pfam16970), RVT-UG4, FimD (COG3188), PRK09926 (fimbrial chaperone)