myRT

myRT report for GCA_902830355.1_ASM90283035v1

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Seq: CADETX010000006.1 TPA_asm: Burkholderia cenocepacia strain BCC0016 genome assembly, contig: B_cenocepacia_BCC0016_ERS784856_SC_contig000006, whole genome shotgun sequence (331449 bp)
Overview 1 RT 1: 277260-282626 bp Neighborhood of RT #1 [277260, 282631] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 277260-278507 bp Feature: domain Description: MFS_MucK Location: 277350-278484 bp Feature: domain Description: MFS_MucK Location: 277350-278484 bp Feature: gene Location: 278811-279140 bp Feature: domain Description: Histone_HNS Location: 278832-279069 bp Feature: domain Description: Histone_HNS Location: 278832-279069 bp Feature: gene Location: 279466-280815 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 279931-280567 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 279931 -280567 bp Feature: gene Location: 281069-281641 bp Feature: domain Description: FIN Location: 281255-281606 bp Feature: domain Description: FIN Location: 281 255-281 606 bp Feature: gene Location: 281876-282631 bp Feature: domain Description: his_ut_repres Location: 281954-282626 bp Feature: domain Description: his_ut_repres Location: 281 954-282626 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: CADETX010000017.1 TPA_asm: Burkholderia cenocepacia strain BCC0016 genome assembly, contig: B_cenocepacia_BCC0016_ERS784856_SC_contig000017, whole genome shotgun sequence (130787 bp)
Overview 1 RT 1: 82349-86932 bp Neighborhood of RT #1 [82349, 86932] D RVT-GII HipB Feature: gene Location: 82349-83419 bp Feature: domain Description: D Location: 82403-83387 bp Feature: domain Description: D Location: 82 403-83387 bp Feature: gene Location: 83607-83951 bp Feature: gene Location: 84031-85563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84442-85132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84442 -85132 bp Feature: gene Location: 86135-86626 bp Feature: domain Description: HipB Location: 86147-86363 bp Feature: domain Description: HipB Location: 86147-86363 bp Feature: gene Location: 86759-86932 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII, HipB (COG1396)

Seq: CADETX010000026.1 TPA_asm: Burkholderia cenocepacia strain BCC0016 genome assembly, contig: B_cenocepacia_BCC0016_ERS784856_SC_contig000026, whole genome shotgun sequence (95329 bp)
Overview 1 RT 1: 28255-36079 bp Neighborhood of RT #1 [28255, 36079] ALDH_F7_AASADH COG3547 RVT-GII GIIM MscK Feature: gene Location: 28255-29895 bp Feature: domain Description: ALDH_F7_AASADH Location: 28438-29854 bp Feature: domain Description: ALDH_F7_AASADH Location: 2843 8-29854 bp Feature: gene Location: 30585-31619 bp Feature: domain Description: COG3547 Location: 30600-31563 bp Feature: domain Description: COG3 547 Location: 3 0600-3 1563 bp Feature: gene Location: 31868-33157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32123-32738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 2123 -3 273 8 bp Feature: domain Description: GIIM Note: maturase Location: 32798-32999 bp Feature: domain Description: GIIM Note: maturase Location: 3 2798-3 2999 bp Feature: gene Location: 33301-35763 bp Feature: domain Description: MscK Location: 33379-35722 bp Feature: domain Description: MscK Location: 3 3 3 79-3 5722 bp Feature: gene Location: 35771-36079 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALDH_F7_AASADH (cd07130), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), MscK (COG3264)