myRT

myRT report for GCA_902830365.1_ASM90283036v1

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Seq: CADETZ010000006.1 TPA_asm: Burkholderia anthina strain BCC1358 genome assembly, contig: Burkholderia_anthina_BCC1358_NODE_6_length_295495_cov_8.43253_pilon, whole genome shotgun sequence (295495 bp)
Overview 1 RT 1: 140772-144665 bp Neighborhood of RT #1 [140772, 144665] Avd_like RVT-DGRs Avd_like Feature: gene Location: 140772-141677 bp Feature: gene Location: 142000-142350 bp Feature: domain Description: Avd_like Location: 142027-142330 bp Feature: domain Description: Avd_like Location: 1 42027-1 42330 bp Feature: gene Location: 142347-143411 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 142557-143190 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 42557-1 431 90 bp Feature: gene Location: 143704-144024 bp Feature: domain Description: Avd_like Location: 143707-143992 bp Feature: domain Description: Avd_like Location: 1 43707-1 43992 bp Feature: gene Location: 144072-144665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs

Seq: CADETZ010000026.1 TPA_asm: Burkholderia anthina strain BCC1358 genome assembly, contig: Burkholderia_anthina_BCC1358_NODE_26_length_130401_cov_11.8102_pilon, whole genome shotgun sequence (130401 bp)
Overview 1 RT 1: 24267-29717 bp Neighborhood of RT #1 [24267, 29740] dTDP_HR_like_SDR_e FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 24267-25211 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 24285-25179 bp Feature: domain Description: dTDP_HR_like_SDR_e Location: 2 42 85-2 5179 bp Feature: gene Location: 25381-25953 bp Feature: domain Description: FIN Location: 25561-25915 bp Feature: domain Description: FIN Location: 2 5561-2 5915 bp Feature: gene Location: 26186-27535 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 26651-27287 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 6651-2 72 87 bp Feature: gene Location: 27638-28231 bp Feature: domain Description: Histone_HNS Location: 27923-28160 bp Feature: domain Description: Histone_HNS Location: 2 792 3-2 8160 bp Feature: gene Location: 28505-29740 bp Feature: domain Description: MFS_MucK Location: 28583-29717 bp Feature: domain Description: MFS_MucK Location: 2 8583-2 9717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dTDP_HR_like_SDR_e (cd05254), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: CADETZ010000093.1 TPA_asm: Burkholderia anthina strain BCC1358 genome assembly, contig: Burkholderia_anthina_BCC1358_NODE_93_length_2660_cov_14.6316_pilon, whole genome shotgun sequence (2660 bp)
Overview 1 RT 1: 91-2208 bp Neighborhood of RT #1 [91, 2208] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 91-1809 bp Feature: RT Description: RVT_N Location: 148-391 bp Feature: RT Description: RVT_N Location: 148-3 91 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 436-1087 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 6-1087 bp Feature: domain Description: GIIM Note: maturase Location: 1141-1372 bp Feature: domain Description: GIIM Note: maturase Location: 1141-13 72 bp Feature: domain Description: HNHc Note: nucleases Location: 1606-1762 bp Feature: domain Description: HNHc Note: nucleases Location: 1606-1762 bp Feature: gene Location: 1895-2041 bp Feature: gene Location: 2080-2208 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)