myRT

myRT report for GCA_902830575.1_ASM90283057v1

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Seq: CADEUK010000005.1 TPA_asm: Burkholderia cenocepacia strain J2315 genome assembly, contig: B_cenocepacia_BCC0013_ERS784840_SC_contig000005, whole genome shotgun sequence (414490 bp)
Overview 1 RT 1: 360300-365666 bp Neighborhood of RT #1 [360300, 365671] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 360300-361547 bp Feature: domain Description: MFS_MucK Location: 360390-361524 bp Feature: domain Description: MFS_MucK Location: 360390-361 524 bp Feature: gene Location: 361851-362180 bp Feature: domain Description: Histone_HNS Location: 361872-362109 bp Feature: domain Description: Histone_HNS Location: 361 872-3621 09 bp Feature: gene Location: 362506-363855 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 362971-363607 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 362971 -363607 bp Feature: gene Location: 364109-364681 bp Feature: domain Description: FIN Location: 364295-364646 bp Feature: domain Description: FIN Location: 364295-364646 bp Feature: gene Location: 364916-365671 bp Feature: domain Description: his_ut_repres Location: 364994-365666 bp Feature: domain Description: his_ut_repres Location: 364994-365666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: CADEUK010000018.1 TPA_asm: Burkholderia cenocepacia strain J2315 genome assembly, contig: B_cenocepacia_BCC0013_ERS784840_SC_contig000018, whole genome shotgun sequence (129753 bp)
Overview 1 RT 1: 79988-84571 bp Neighborhood of RT #1 [79988, 84571] D RVT-GII HipB Feature: gene Location: 79988-81058 bp Feature: domain Description: D Location: 80042-81026 bp Feature: domain Description: D Location: 80042 -8102 6 bp Feature: gene Location: 81246-81590 bp Feature: gene Location: 81670-83202 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82081-82771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 081-82 771 bp Feature: gene Location: 83774-84229 bp Feature: domain Description: HipB Location: 83783-83966 bp Feature: domain Description: HipB Location: 83783-83966 bp Feature: gene Location: 84398-84571 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), RVT-GII, HipB (COG1396)

Seq: CADEUK010000042.1 TPA_asm: Burkholderia cenocepacia strain J2315 genome assembly, contig: B_cenocepacia_BCC0013_ERS784840_SC_contig000042, whole genome shotgun sequence (44341 bp)
Overview 1 RT 1: 40225-44337 bp Neighborhood of RT #1 [40225, 44339] Gmd GDP_MD_SDR_e RVT-GII GIIM COG3547 Feature: gene Location: 40225-41271 bp Feature: domain Description: Gmd Location: 40240-41257 bp Feature: domain Description: Gmd Location: 40240-41257 bp Feature: gene Location: 41333-42223 bp Feature: domain Description: GDP_MD_SDR_e Location: 41336-42191 bp Feature: domain Description: GDP_MD_SDR_e Location: 413 3 6-42191 bp Feature: gene Location: 42343-43632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42598-43213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42598-43 213 bp Feature: domain Description: GIIM Note: maturase Location: 43273-43474 bp Feature: domain Description: GIIM Note: maturase Location: 43 273 -43 474 bp Feature: gene Location: 43881-44339 bp Feature: domain Description: COG3547 Location: 43896-44337 bp Feature: domain Description: COG3 547 Location: 43 896-443 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Gmd (COG1089), GDP_MD_SDR_e (cd05260), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )