myRT

myRT report for GCA_902830725.1_ASM90283072v1

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Seq: CADEUY010000002.1 TPA_asm: Burkholderia contaminans strain BCC0123 genome assembly, contig: B_contaminans_BCC0123_ERS785009_SC_contig000002, whole genome shotgun sequence (1250252 bp)
Overview 1 RT 1: 1178236-1183542 bp Neighborhood of RT #1 [1178236, 1183542] MFS_MucK Histone_HNS RVT-Retrons FIN Feature: gene Location: 1178236-1179483 bp Feature: domain Description: MFS_MucK Location: 1178326-1179460 bp Feature: domain Description: MFS_MucK Location: 1 1 78326-1 1 79460 bp Feature: gene Location: 1179781-1180110 bp Feature: domain Description: Histone_HNS Location: 1179802-1180039 bp Feature: domain Description: Histone_HNS Location: 1 1 79802-1 1 80039 bp Feature: gene Location: 1180423-1181883 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1180999-1181635 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 80999-1 1 81 635 bp Feature: gene Location: 1182038-1182610 bp Feature: domain Description: FIN Location: 1182215-1182572 bp Feature: domain Description: FIN Location: 1 1 8221 5-1 1 82572 bp Feature: gene Location: 1183270-1183542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389)

Seq: CADEUY010000003.1 TPA_asm: Burkholderia contaminans strain BCC0123 genome assembly, contig: B_contaminans_BCC0123_ERS785009_SC_contig000003, whole genome shotgun sequence (762014 bp)
Overview 1 RT 1: 435038-440771 bp Neighborhood of RT #1 [435038, 440771] DEXHc_Snf RVT_N RVT-GII GIIM HNHc SF2_C_SNF Feature: gene Location: 435038-435343 bp Feature: gene Location: 435479-436534 bp Feature: domain Description: DEXHc_Snf Location: 435698-435959 bp Feature: domain Description: DEXHc_Snf Location: 435698-435959 bp Feature: gene Location: 437131-438849 bp Feature: RT Description: RVT_N Location: 437188-437425 bp Feature: RT Description: RVT_N Location: 437188-43742 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437476-438127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437476-43812 7 bp Feature: domain Description: GIIM Note: maturase Location: 438181-438412 bp Feature: domain Description: GIIM Note: maturase Location: 438181-438412 bp Feature: domain Description: HNHc Note: nucleases Location: 438646-438802 bp Feature: domain Description: HNHc Note: nucleases Location: 438646-438802 bp Feature: gene Location: 439016-440176 bp Feature: domain Description: SF2_C_SNF Location: 439634-440012 bp Feature: domain Description: SF2 _C_SNF Location: 439634-440012 bp Feature: gene Location: 440235-440771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793)

Seq: CADEUY010000017.1 TPA_asm: Burkholderia contaminans strain BCC0123 genome assembly, contig: B_contaminans_BCC0123_ERS785009_SC_contig000017, whole genome shotgun sequence (129020 bp)
Overview 1 RT 1: 42393-47438 bp Neighborhood of RT #1 [42393, 47449] MFS_ExuT_GudP_like Ga5DH-like_SDR_c RVT-GII GIIM PHA02517 InsE Feature: gene Location: 42393-43703 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 42435-43638 bp Feature: domain Description: MFS_ExuT_GudP_like Location: 4243 5-43 63 8 bp Feature: gene Location: 43709-44437 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 43736-44432 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 43 73 6-4443 2 bp Feature: gene Location: 44718-45965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44721-45297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44721-45297 bp Feature: domain Description: GIIM Note: maturase Location: 45348-45582 bp Feature: domain Description: GIIM Note: maturase Location: 453 48-45582 bp Feature: gene Location: 46212-47066 bp Feature: domain Description: PHA02517 Location: 46215-47043 bp Feature: domain Description: PHA02517 Location: 46215-47043 bp Feature: gene Location: 47123-47449 bp Feature: domain Description: InsE Location: 47129-47438 bp Feature: domain Description: InsE Location: 47129-4743 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_ExuT_GudP_like (cd17319), Ga5DH-like_SDR_c (cd05347), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)