myRT

myRT report for GCA_902833075.1_ASM90283307v1

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Seq: CADFEO010000023.1 TPA_asm: Burkholderia sp. BCC0405 genome assembly, contig: B_cepacia_complex_BCC0405_ERS784923_SC_contig000023, whole genome shotgun sequence (138063 bp)
Overview 1 RT 1: 95582-101500 bp Neighborhood of RT #1 [95582, 101523] M14_ASTE_ASPA-like RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 95582-96565 bp Feature: domain Description: M14_ASTE_ASPA-like Location: 95648-96269 bp Feature: domain Description: M1 4_ASTE_ASPA-like Location: 95648-96269 bp Feature: gene Location: 96790-97062 bp Feature: gene Location: 97979-99328 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 98444-99080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 98444-99080 bp Feature: gene Location: 99632-99982 bp Feature: domain Description: Histone_HNS Location: 99674-99911 bp Feature: domain Description: Histone_HNS Location: 99674-9991 1 bp Feature: gene Location: 100276-101523 bp Feature: domain Description: MFS_MucK Location: 100366-101500 bp Feature: domain Description: MFS_MucK Location: 1 00366-1 01 500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M14_ASTE_ASPA-like (cd06910), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: CADFEO010000029.1 TPA_asm: Burkholderia sp. BCC0405 genome assembly, contig: B_cepacia_complex_BCC0405_ERS784923_SC_contig000029, whole genome shotgun sequence (92385 bp)
Overview 1 RT 1: 52862-55374 bp Neighborhood of RT #1 [52862, 55374] RVT-GII GIIM group_II_RT_mat Feature: gene Location: 52862-53017 bp Feature: gene Location: 53014-53268 bp Feature: gene Location: 53359-54411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53377-53992 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53377-53992 bp Feature: domain Description: GIIM Note: maturase Location: 54052-54253 bp Feature: domain Description: GIIM Note: maturase Location: 54052 -542 53 bp Feature: gene Location: 54398-54730 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 54566-54713 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 54566-54713 bp Feature: gene Location: 55150-55374 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), group_II_RT_mat (TIGR04416)

Seq: CADFEO010000042.1 TPA_asm: Burkholderia sp. BCC0405 genome assembly, contig: B_cepacia_complex_BCC0405_ERS784923_SC_contig000042, whole genome shotgun sequence (16492 bp)
Overview 1 RT 1: 12414-16267 bp Neighborhood of RT #1 [12414, 16296] Acyl_ACP_Desat Cfa RVT-GII DDE_5 COG5659 Feature: gene Location: 12414-13388 bp Feature: domain Description: Acyl_ACP_Desat Location: 12483-13314 bp Feature: domain Description: Acyl_ACP_Desat Location: 12483 -13 3 14 bp Feature: gene Location: 13548-14441 bp Feature: domain Description: Cfa Location: 13575-14388 bp Feature: domain Description: Cfa Location: 13 575-143 88 bp Feature: gene Location: 14843-15067 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14852-15011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14852-15011 bp Feature: gene Location: 15163-15426 bp Feature: domain Description: DDE_5 Location: 15226-15421 bp Feature: domain Description: DDE_5 Location: 15226-15421 bp Feature: gene Location: 15445-16296 bp Feature: domain Description: COG5659 Location: 15451-16267 bp Feature: domain Description: COG5659 Location: 15451-16267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acyl_ACP_Desat (cd01050), Cfa (COG2230), RVT-GII, DDE_5 (pfam13546), COG5659 (SRSO17 transposase )