myRT

myRT report for GCA_902833155.1_ASM90283315v1

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Seq: CADFEH010000003.1 TPA_asm: Burkholderia sp. BCC1047 genome assembly, contig: B_cepacia_complex_BCC1047_ERS784973_SC_contig000003, whole genome shotgun sequence (417426 bp)
Overview 1 RT 1: 345866-350275 bp Neighborhood of RT #1 [345866, 350275] Dcm Dcm RVT-DGRs Avd_like Feature: gene Location: 345866-346126 bp Feature: gene Location: 346141-348417 bp Feature: domain Description: Dcm Location: 346552-347158 bp Feature: domain Description: Dcm Location: 346552-3471 58 bp Feature: domain Description: Dcm Location: 348154-348316 bp Feature: domain Description: Dcm Location: 3481 54-34831 6 bp Feature: gene Location: 348098-349372 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 348467-349154 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 348467-3491 54 bp Feature: gene Location: 349440-349796 bp Feature: domain Description: Avd_like Location: 349467-349773 bp Feature: domain Description: Avd_like Location: 349467-349773 bp Feature: gene Location: 349811-350275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376)

Seq: CADFEH010000010.1 TPA_asm: Burkholderia sp. BCC1047 genome assembly, contig: B_cepacia_complex_BCC1047_ERS784973_SC_contig000010, whole genome shotgun sequence (199774 bp)
Overview 1 RT 1: 62849-68823 bp Neighborhood of RT #1 [62849, 68909] HutH his_ut_repres RVT-Retrons Histone_HNS MarR Acetyltransf_1 Feature: gene Location: 62849-64342 bp Feature: domain Description: HutH Location: 62861-64316 bp Feature: domain Description: HutH Location: 62 861-64316 bp Feature: gene Location: 64087-65148 bp Feature: domain Description: his_ut_repres Location: 64471-65143 bp Feature: domain Description: his_ut_repres Location: 64471-65143 bp Feature: gene Location: 65422-66825 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65941-66577 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65941-66577 bp Feature: gene Location: 66950-67480 bp Feature: domain Description: Histone_HNS Location: 67172-67409 bp Feature: domain Description: Histone_HNS Location: 67172 -67409 bp Feature: gene Location: 67929-68909 bp Feature: domain Description: MarR Location: 68052-68370 bp Feature: domain Description: MarR Location: 68052 -68370 bp Feature: domain Description: Acetyltransf_1 Location: 68514-68823 bp Feature: domain Description: Acetyltransf_1 Location: 68514-6882 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HutH (COG2986), his_ut_repres (TIGR02018), RVT-Retrons, Histone_HNS (pfam00816), MarR (pfam01047), Acetyltransf_1 (pfam00583)

Seq: CADFEH010000015.1 TPA_asm: Burkholderia sp. BCC1047 genome assembly, contig: B_cepacia_complex_BCC1047_ERS784973_SC_contig000015, whole genome shotgun sequence (158103 bp)
Overview 1 RT 1: 153558-157879 bp Neighborhood of RT #1 [153558, 158061] dppF Tiki RVT-GII GIIM Feature: gene Location: 153558-154571 bp Feature: domain Description: dppF Location: 153600-154563 bp Feature: domain Description: dppF Location: 153 600-154563 bp Feature: gene Location: 154564-155709 bp Feature: domain Description: Tiki Location: 154894-155698 bp Feature: domain Description: Tiki Location: 154894-155698 bp Feature: gene Location: 156802-158061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156994-157609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156994-157609 bp Feature: domain Description: GIIM Note: maturase Location: 157663-157879 bp Feature: domain Description: GIIM Note: maturase Location: 157663 -157879 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dppF (PRK11308), Tiki (cd14789), RVT-GII, GIIM (pfam08388)

Seq: CADFEH010000019.1 TPA_asm: Burkholderia sp. BCC1047 genome assembly, contig: B_cepacia_complex_BCC1047_ERS784973_SC_contig000019, whole genome shotgun sequence (146033 bp)
Overview 1 RT 1: 92728-98602 bp Neighborhood of RT #1 [92728, 98602] HTH_LUXR gram_neg_porins RVT-GII ARO8 Feature: gene Location: 92728-93465 bp Feature: domain Description: HTH_LUXR Location: 93271-93430 bp Feature: domain Description: HTH_LUXR Location: 93271-934 30 bp Feature: gene Location: 93922-94980 bp Feature: domain Description: gram_neg_porins Location: 93994-94978 bp Feature: domain Description: gram_neg_porins Location: 93994 -94 978 bp Feature: gene Location: 95512-96822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95755-96442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95755-964 4 2 bp Feature: gene Location: 96963-98354 bp Feature: domain Description: ARO8 Location: 97017-98322 bp Feature: domain Description: ARO8 Location: 97017-98322 bp Feature: gene Location: 98399-98602 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_LUXR (smart00421), gram_neg_porins (cd00342), RVT-GII, ARO8 (COG1167)