myRT

myRT report for GCA_902833505.1_ASM90283350v1

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Seq: CADFFY010000002.1 TPA_asm: Burkholderia vietnamiensis strain BCC1408 genome assembly, contig: unitig_7_quiver, whole genome shotgun sequence (1872953 bp)
Overview 1 RT 1: 1088772-1092062 bp 2 RT 2: 1778094-1782570 bp Neighborhood of RT #1 [1088772, 1092142] RVT-DGRs Avd_like CLECT_VCBS Neighborhood of RT #2 [1778094, 1782587] DUF1566 Avd_like RVT-DGRs DUF5131 XerC Feature: gene Location: 1088772-1089524 bp Feature: gene Location: 1089553-1089960 bp Feature: gene Location: 1089971-1091299 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1090397-1091084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 090397-1 091 084 bp Feature: gene Location: 1091292-1091669 bp Feature: domain Description: Avd_like Location: 1091319-1091625 bp Feature: domain Description: Avd_like Location: 1 091 31 9-1 091 625 bp Feature: gene Location: 1091684-1092142 bp Feature: domain Description: CLECT_VCBS Location: 1091891-1092062 bp Feature: domain Description: CLECT_VCBS Location: 1 091 891 -1 092062 bp Feature: gene Location: 1778094-1778555 bp Feature: domain Description: DUF1566 Location: 1778400-1778532 bp Feature: domain Description: DUF1 566 Location: 1 778400-1 778532 bp Feature: gene Location: 1778570-1778944 bp Feature: domain Description: Avd_like Location: 1778597-1778903 bp Feature: domain Description: Avd_like Location: 1 778597-1 778903 bp Feature: gene Location: 1778991-1780292 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1779378-1780065 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 779378-1 780065 bp Feature: gene Location: 1780421-1781329 bp Feature: domain Description: DUF5131 Location: 1780430-1781318 bp Feature: domain Description: DUF51 31 Location: 1 780430-1 781 31 8 bp Feature: gene Location: 1781544-1782587 bp Feature: domain Description: XerC Location: 1781643-1782570 bp Feature: domain Description: XerC Location: 1 781 643-1 782570 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), CLECT_VCBS (cd03603), DUF1566 (pfam07603), DUF5131 (pfam07505), XerC (COG4973)

Seq: CADFFY010000003.1 TPA_asm: Burkholderia vietnamiensis strain BCC1408 genome assembly, contig: unitig_13_quiver, whole genome shotgun sequence (1214685 bp)
Overview 1 RT 1: 1132614-1137764 bp Neighborhood of RT #1 [1132614, 1137787] YhaK PRK03767 RVT-GII GIIM LrgB Feature: gene Location: 1132614-1133339 bp Feature: domain Description: YhaK Location: 1132617-1133319 bp Feature: domain Description: YhaK Location: 1132 617-1133319 bp Feature: gene Location: 1133402-1134004 bp Feature: domain Description: PRK03767 Location: 1133405-1133999 bp Feature: domain Description: PRK03767 Location: 1133405-1133999 bp Feature: gene Location: 1134627-1135820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1134786-1135398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1134786-1135398 bp Feature: domain Description: GIIM Note: maturase Location: 1135458-1135662 bp Feature: domain Description: GIIM Note: maturase Location: 1135458-1135662 bp Feature: gene Location: 1136434-1136973 bp Feature: gene Location: 1137053-1137787 bp Feature: domain Description: LrgB Location: 1137128-1137764 bp Feature: domain Description: LrgB Location: 113712 8-1137764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhaK (COG1741), PRK03767 (NAD(P)H:quinone oxidoreductase; Provisional), RVT-GII, GIIM (pfam08388), LrgB (pfam04172)

Seq: CADFFY010000006.1 TPA_asm: Burkholderia vietnamiensis strain BCC1408 genome assembly, contig: unitig_9_quiver, whole genome shotgun sequence (665996 bp)
Overview 1 RT 1: 62106-66474 bp Neighborhood of RT #1 [62106, 66474] HTH_XRE RVT-Retrons KAP_NTPase Feature: gene Location: 62106-62345 bp Feature: gene Location: 62398-62703 bp Feature: domain Description: HTH_XRE Location: 62410-62572 bp Feature: domain Description: HTH_XRE Location: 62410-62572 bp Feature: gene Location: 62669-63640 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62819-63383 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62819-63 3 83 bp Feature: gene Location: 63659-65593 bp Feature: domain Description: KAP_NTPase Location: 63713-64802 bp Feature: domain Description: KAP_NTPase Location: 63 713 -64802 bp Feature: gene Location: 65923-66474 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, KAP_NTPase (pfam07693)