myRT

myRT report for GCA_902833525.1_ASM90283352v1

Download annotations/find similar RTs

Seq: CADFFP010000001.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_1_length_784972_cov_10.1431_pilon, whole genome shotgun sequence (784972 bp)
Overview 1 RT 1: 94478-102224 bp 2 RT 2: 435936-441830 bp Neighborhood of RT #1 [94478, 102224] YbjD YbjD RVT-Retrons HipB Neighborhood of RT #2 [435936, 441934] YGGT YGGT AAA_21 AAA_21 RVT-Retrons DEXHc_Ski2 Feature: gene Location: 94478-98314 bp Feature: gene Location: 98683-100455 bp Feature: domain Description: YbjD Location: 98689-98761 bp Feature: domain Description: YbjD Location: 98689-98761 bp Feature: domain Description: YbjD Location: 99571-99781 bp Feature: domain Description: YbjD Location: 99571 -99781 bp Feature: gene Location: 100688-101608 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 100784-101360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 00784-1 01 360 bp Feature: gene Location: 101628-101933 bp Feature: domain Description: HipB Location: 101637-101895 bp Feature: domain Description: HipB Location: 1 01 637-1 01 895 bp Feature: gene Location: 101967-102224 bp Feature: gene Location: 435936-436499 bp Feature: domain Description: YGGT Location: 435969-436176 bp Feature: domain Description: YGGT Location: 435969-4361 76 bp Feature: domain Description: YGGT Location: 436260-436458 bp Feature: domain Description: YGGT Location: 436260-436458 bp Feature: gene Location: 437591-438808 bp Feature: domain Description: AAA_21 Location: 437687-437732 bp Feature: domain Description: AAA_21 Location: 437687-437732 bp Feature: domain Description: AAA_21 Location: 438260-438488 bp Feature: domain Description: AAA_21 Location: 438260-438488 bp Feature: gene Location: 439085-440125 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 439238-439796 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 439238-439796 bp Feature: gene Location: 440448-440666 bp Feature: gene Location: 441047-441934 bp Feature: domain Description: DEXHc_Ski2 Location: 441491-441830 bp Feature: domain Description: DEXHc_Ski2 Location: 441 491 -441 830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), RVT-Retrons, HipB (COG1396), YGGT (pfam02325), AAA_21 (pfam13304), DEXHc_Ski2 (cd17921)

Seq: CADFFP010000005.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_5_length_386911_cov_10.1649_pilon, whole genome shotgun sequence (386911 bp)
Overview 1 RT 1: 51309-57452 bp Neighborhood of RT #1 [51309, 57463] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 ilvH Feature: gene Location: 51309-52175 bp Feature: domain Description: PssA Location: 51438-52119 bp Feature: domain Description: PssA Location: 51438-52 119 bp Feature: gene Location: 52200-52838 bp Feature: domain Description: PRK05305 Location: 52224-52833 bp Feature: domain Description: PRK05305 Location: 52 2 2 4-52 833 bp Feature: gene Location: 52956-54557 bp Feature: domain Description: RVT_N Location: 52959-53157 bp Feature: domain Description: RVT_N Location: 52 959-53157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53202-53850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 532 02 -53850 bp Feature: domain Description: GIIM Note: maturase Location: 53901-54135 bp Feature: domain Description: GIIM Note: maturase Location: 53901-54135 bp Feature: domain Description: HNHc Note: nucleases Location: 54378-54519 bp Feature: domain Description: HNHc Note: nucleases Location: 54378-54519 bp Feature: gene Location: 55835-56851 bp Feature: domain Description: PRK05479 Location: 55838-56819 bp Feature: domain Description: PRK05479 Location: 55838-56819 bp Feature: gene Location: 56972-57463 bp Feature: domain Description: ilvH Location: 56975-57452 bp Feature: domain Description: ilvH Location: 56975-57452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895)

Seq: CADFFP010000015.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_15_length_181956_cov_10.2263_pilon, whole genome shotgun sequence (181956 bp)
Overview 1 RT 1: 20952-27042 bp Neighborhood of RT #1 [20952, 27056] YdcF-like RVT-Retrons GlxA GyrI-like 2A0305 Feature: gene Location: 20952-21512 bp Feature: domain Description: YdcF-like Location: 21051-21441 bp Feature: domain Description: YdcF-like Location: 21051-21441 bp Feature: gene Location: 21759-22538 bp Feature: gene Location: 22573-24033 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23137-23776 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 13 7-23 776 bp Feature: gene Location: 24532-25398 bp Feature: domain Description: GlxA Location: 24559-24877 bp Feature: domain Description: GlxA Location: 24559-24877 bp Feature: domain Description: GyrI-like Location: 24931-25393 bp Feature: domain Description: GyrI-like Location: 2493 1-253 93 bp Feature: gene Location: 25653-27056 bp Feature: domain Description: 2A0305 Location: 25698-27042 bp Feature: domain Description: 2A03 05 Location: 25698-27042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdcF-like (cl00630), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445), 2A0305 (TIGR00908)

Seq: CADFFP010000057.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_57_length_6804_cov_10.6546_pilon, whole genome shotgun sequence (6804 bp)
Overview 1 RT 1: 5487-6618 bp Neighborhood of RT #1 [5487, 6803] RVT-GII Feature: gene Location: 5487-5828 bp Feature: gene Location: 5903-6151 bp Feature: gene Location: 6468-6803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6474-6618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64 74 -6618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CADFFP010000064.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_64_length_1770_cov_19.062_pilon, whole genome shotgun sequence (1770 bp)
Overview 1 RT 1: 523-1770 bp Neighborhood of RT #1 [523, 1769] AdoMet_MTases RVT-GII Feature: gene Location: 523-1290 bp Feature: domain Description: AdoMet_MTases Location: 661-991 bp Feature: domain Description: AdoMet_MTases Location: 661-991 bp Feature: gene Location: 1314-1484 bp Feature: gene Location: 1569-1769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1590-1770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 90-1770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), RVT-GII

Seq: CADFFP010000080.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_80_length_1109_cov_62.1301_pilon, whole genome shotgun sequence (1109 bp)
Overview 1 RT 1: 1-1103 bp Neighborhood of RT #1 [1, 1108] RVT-GII Feature: gene Location: 1-144 bp Feature: gene Location: 479-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1103 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-1103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: CADFFP010000082.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_82_length_899_cov_64.0543_pilon, whole genome shotgun sequence (899 bp)
Overview 1 RT 1: 185-827 bp Neighborhood of RT #1 [185, 898] RVT-GII GIIM Feature: gene Location: 185-898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-542 bp Feature: domain Description: GIIM Note: maturase Location: 611-827 bp Feature: domain Description: GIIM Note: maturase Location: 611-827 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADFFP010000216.1 TPA_asm: Paraburkholderia bryophila strain BCC1875 genome assembly, contig: Burkholderia_bryophila_BCC1875_NODE_216_length_215_cov_54.0889_pilon, whole genome shotgun sequence (215 bp)
Overview 1 RT 1: 2-215 bp Neighborhood of RT #1 [2, 214] RVT-GII Feature: gene Location: 2-214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8 -215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII