myRT

myRT report for GCA_902833555.1_ASM90283355v1

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Seq: CADFGA010000029.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000029, whole genome shotgun sequence (80875 bp)
Overview 1 RT 1: 8814-14270 bp Neighborhood of RT #1 [8814, 14293] HugZ MFS_MosC_like RVT-GII GIIM LrgB Feature: gene Location: 8814-9491 bp Feature: domain Description: HugZ Location: 8844-9225 bp Feature: domain Description: HugZ Location: 8844-9225 bp Feature: gene Location: 9807-11021 bp Feature: domain Description: MFS_MosC_like Location: 9900-10995 bp Feature: domain Description: MFS_MosC_like Location: 9900-1 0995 bp Feature: gene Location: 11133-12326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11292-11904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 292-1 1 904 bp Feature: domain Description: GIIM Note: maturase Location: 11964-12168 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 964-1 21 68 bp Feature: gene Location: 12940-13479 bp Feature: gene Location: 13559-14293 bp Feature: domain Description: LrgB Location: 13634-14270 bp Feature: domain Description: LrgB Location: 1 3634-1 4270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HugZ (COG0748), MFS_MosC_like (cd17393), RVT-GII, GIIM (pfam08388), LrgB (pfam04172)

Seq: CADFGA010000030.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000030, whole genome shotgun sequence (79228 bp)
Overview 1 RT 1: 4932-14029 bp Neighborhood of RT #1 [4932, 14037] PRK00711 RVT-GII GIIM HNHc PRK05297 yhbS Feature: gene Location: 4932-6233 bp Feature: domain Description: PRK00711 Location: 4935-6201 bp Feature: domain Description: PRK00711 Location: 4935-62 01 bp Feature: gene Location: 6309-6497 bp Feature: gene Location: 7985-9283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8576 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7988-8576 bp Feature: domain Description: GIIM Note: maturase Location: 8627-8861 bp Feature: domain Description: GIIM Note: maturase Location: 862 7-8861 bp Feature: domain Description: HNHc Note: nucleases Location: 9089-9245 bp Feature: domain Description: HNHc Note: nucleases Location: 9089-92 45 bp Feature: gene Location: 9434-13498 bp Feature: domain Description: PRK05297 Location: 9449-13496 bp Feature: domain Description: PRK052 97 Location: 9449-13496 bp Feature: gene Location: 13498-14037 bp Feature: domain Description: yhbS Location: 13534-14029 bp Feature: domain Description: yhbS Location: 13534-1402 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00711 (D-amino acid dehydrogenase), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05297 (phosphoribosylformylglycinamidine synthase; Provisional), yhbS (COG3153)

Seq: CADFGA010000037.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000037, whole genome shotgun sequence (65020 bp)
Overview 1 RT 1: 60832-65010 bp Neighborhood of RT #1 [60832, 65018] Prim_Zn_Ribbon Toprim_3 RVT-GII COG4584 PRK09183 Feature: gene Location: 60832-61977 bp Feature: domain Description: Prim_Zn_Ribbon Location: 60940-61042 bp Feature: domain Description: Prim_Zn_Ribbon Location: 60940-61042 bp Feature: domain Description: Toprim_3 Location: 61564-61858 bp Feature: domain Description: Toprim_3 Location: 61564-61858 bp Feature: gene Location: 62075-62296 bp Feature: gene Location: 62728-63147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63073-63130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 073 -63 13 0 bp Feature: gene Location: 63223-64251 bp Feature: domain Description: COG4584 Location: 63226-64075 bp Feature: domain Description: COG4584 Location: 63 226-64075 bp Feature: gene Location: 64248-65018 bp Feature: domain Description: PRK09183 Location: 64251-65010 bp Feature: domain Description: PRK09183 Location: 64251-65010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), Toprim_3 (pfam13362), RVT-GII, COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional)

Seq: CADFGA010000044.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000044, whole genome shotgun sequence (54709 bp)
Overview 1 RT 1: 4192-8625 bp Neighborhood of RT #1 [4192, 8625] HTH_MARR RVT-DGRs Avd_like Feature: gene Location: 4192-4542 bp Feature: domain Description: HTH_MARR Location: 4216-4363 bp Feature: domain Description: HTH_MARR Location: 4 216-4 363 bp Feature: gene Location: 4539-6419 bp Feature: gene Location: 6430-7758 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6856-7543 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6856-754 3 bp Feature: gene Location: 7751-8128 bp Feature: domain Description: Avd_like Location: 7778-8084 bp Feature: domain Description: Avd_like Location: 7778-8084 bp Feature: gene Location: 8143-8625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_MARR (smart00347), RVT-DGRs, Avd_like (cd16376)

Seq: CADFGA010000049.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000049, whole genome shotgun sequence (44674 bp)
Overview 1 RT 1: 40273-43183 bp Neighborhood of RT #1 [40273, 43233] PssA PRK05305 RVT-GII GIIM HNHc Feature: gene Location: 40273-41145 bp Feature: domain Description: PssA Location: 40411-41089 bp Feature: domain Description: PssA Location: 40411-41089 bp Feature: gene Location: 41161-41805 bp Feature: domain Description: PRK05305 Location: 41185-41797 bp Feature: domain Description: PRK05 305 Location: 41185 -41797 bp Feature: gene Location: 41923-43233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41926-42514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41926-425 14 bp Feature: domain Description: GIIM Note: maturase Location: 42565-42799 bp Feature: domain Description: GIIM Note: maturase Location: 425 65 -42799 bp Feature: domain Description: HNHc Note: nucleases Location: 43030-43183 bp Feature: domain Description: HNHc Note: nucleases Location: 43030-43183 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CADFGA010000085.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000085, whole genome shotgun sequence (9919 bp)
Overview 1 RT 1: 1-3188 bp Neighborhood of RT #1 [1, 3256] IstB_IS21 RVT-GII GIIM XerD Feature: gene Location: 1-315 bp Feature: domain Description: IstB_IS21 Location: 10-238 bp Feature: domain Description: IstB_IS21 Location: 10-238 bp Feature: gene Location: 200-1297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 407-878 bp Feature: domain Description: GIIM Note: maturase Location: 938-1139 bp Feature: domain Description: GIIM Note: maturase Location: 938-1139 bp Feature: gene Location: 1771-2256 bp Feature: gene Location: 2327-3256 bp Feature: domain Description: XerD Location: 2414-3188 bp Feature: domain Description: XerD Location: 2414-3188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), RVT-GII, GIIM (pfam08388), XerD (COG4974)

Seq: CADFGA010000086.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000086, whole genome shotgun sequence (9092 bp)
Overview 1 RT 1: 191-2716 bp Neighborhood of RT #1 [191, 2739] RVT-GII Histone_HNS Feature: gene Location: 191-1048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 734-1016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7 34-1016 bp Feature: gene Location: 1180-2031 bp Feature: gene Location: 2299-2739 bp Feature: domain Description: Histone_HNS Location: 2461-2716 bp Feature: domain Description: Histone_HNS Location: 2461-27 16 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Histone_HNS (pfam00816)

Seq: CADFGA010000104.1 TPA_asm: Burkholderia vietnamiensis strain BCC1193 genome assembly, contig: B_vietnamiensis_BCC1193_ERS785058_SC_contig000104, whole genome shotgun sequence (2843 bp)
Overview 1 RT 1: 3-2582 bp Neighborhood of RT #1 [3, 2659] RVT-GII COG4584 COG4584 IstB_IS21_ATP IstB_IS21 Feature: gene Location: 3-209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36-192 bp Feature: gene Location: 356-1879 bp Feature: domain Description: COG4584 Location: 452-1232 bp Feature: domain Description: COG458 4 Location: 452-1232 bp Feature: domain Description: COG4584 Location: 1319-1748 bp Feature: domain Description: COG458 4 Location: 1319-1748 bp Feature: gene Location: 1892-2659 bp Feature: domain Description: IstB_IS21_ATP Location: 1964-2048 bp Feature: domain Description: IstB_IS21_ATP Location: 1964-2048 bp Feature: domain Description: IstB_IS21 Location: 2051-2582 bp Feature: domain Description: IstB_IS21 Location: 2051-258 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4584 (Transposase ), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695)