myRT

myRT report for GCA_902833635.1_ASM90283363v1

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Seq: CADFFZ010000001.1 TPA_asm: Paraburkholderia caledonica strain LMG 19076 genome assembly, contig: B_caledonica_BCC0767_ERS784802_SC_contig000001, whole genome shotgun sequence (861889 bp)
Overview 1 RT 1: 21442-26047 bp Neighborhood of RT #1 [21442, 26073] PRK10337 RVT-GII GIIM Cupin_6 AraC SnoaL_2 Feature: gene Location: 21442-22299 bp Feature: domain Description: PRK10337 Location: 21466-22255 bp Feature: domain Description: PRK1 0337 Location: 21 466-22255 bp Feature: gene Location: 22384-22605 bp Feature: gene Location: 22940-24250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23231-23894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23231 -23894 bp Feature: domain Description: GIIM Note: maturase Location: 23963-24179 bp Feature: domain Description: GIIM Note: maturase Location: 23963-241 79 bp Feature: gene Location: 24663-25433 bp Feature: domain Description: Cupin_6 Location: 24672-25047 bp Feature: domain Description: Cupin_6 Location: 24672-25047 bp Feature: domain Description: AraC Location: 25086-25410 bp Feature: domain Description: AraC Location: 25086-2541 0 bp Feature: gene Location: 25717-26073 bp Feature: domain Description: SnoaL_2 Location: 25771-26047 bp Feature: domain Description: SnoaL_2 Location: 25771 -26047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10337 (sensor protein QseC; Provisional), RVT-GII, GIIM (pfam08388), Cupin_6 (pfam12852), AraC (COG2207), SnoaL_2 (pfam12680)

Seq: CADFFZ010000017.1 TPA_asm: Paraburkholderia caledonica strain LMG 19076 genome assembly, contig: B_caledonica_BCC0767_ERS784802_SC_contig000017, whole genome shotgun sequence (129980 bp)
Overview 1 RT 1: 114226-120109 bp Neighborhood of RT #1 [114226, 120114] PBP1_ABC_LIVBP_like DapA RVT-GII Phasin_2 AcAcCoA_reduct Feature: gene Location: 114226-115377 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 114325-115333 bp Feature: domain Description: PBP1_ABC_LIVBP_like Location: 11432 5-115333 bp Feature: gene Location: 115688-116632 bp Feature: domain Description: DapA Location: 115700-116573 bp Feature: domain Description: DapA Location: 115700-116573 bp Feature: gene Location: 116803-117939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117328-117748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11732 8-117748 bp Feature: gene Location: 118557-119120 bp Feature: domain Description: Phasin_2 Location: 118578-118863 bp Feature: domain Description: Phasin_2 Location: 118578-118863 bp Feature: gene Location: 119245-120114 bp Feature: domain Description: AcAcCoA_reduct Location: 119383-120109 bp Feature: domain Description: AcAcCoA_reduct Location: 119383-12 0109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_ABC_LIVBP_like, DapA (COG0329), RVT-GII, Phasin_2 (pfam09361), AcAcCoA_reduct (TIGR01829)

Seq: CADFFZ010000026.1 TPA_asm: Paraburkholderia caledonica strain LMG 19076 genome assembly, contig: B_caledonica_BCC0767_ERS784802_SC_contig000026, whole genome shotgun sequence (42080 bp)
Overview 1 RT 1: 24283-29840 bp Neighborhood of RT #1 [24283, 29840] RVT_N RVT-GII PRK05658 Feature: gene Location: 24283-24486 bp Feature: gene Location: 24677-24958 bp Feature: gene Location: 25406-26473 bp Feature: RT Description: RVT_N Location: 25625-25868 bp Feature: RT Description: RVT_N Location: 25625-25868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25913-26453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25913 -26453 bp Feature: gene Location: 27133-29211 bp Feature: domain Description: PRK05658 Location: 27346-29206 bp Feature: domain Description: PRK05658 Location: 273 46-29206 bp Feature: gene Location: 29394-29840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, PRK05658 (RNA polymerase sigma factor RpoD; Validated)