myRT

myRT report for GCA_902833645.1_ASM90283364v1

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Seq: CADFGE010000001.1 TPA_asm: Paraburkholderia fungorum strain LMG 16225 genome assembly, contig: B_fungorum_BCC0770_ERS784892_SC_contig000001, whole genome shotgun sequence (1509393 bp)
Overview 1 RT 1: 1156063-1166087 bp Neighborhood of RT #1 [1156063, 1166104] 2A0305 GlxA GyrI-like RVT-Retrons VgrG DUF2345 lambda_lys_like Feature: gene Location: 1156063-1157466 bp Feature: domain Description: 2A0305 Location: 1156108-1157452 bp Feature: domain Description: 2A0305 Location: 1 1 561 08-1 1 57452 bp Feature: gene Location: 1157723-1158589 bp Feature: domain Description: GlxA Location: 1157747-1158068 bp Feature: domain Description: GlxA Location: 1 1 57747-1 1 58068 bp Feature: domain Description: GyrI-like Location: 1158122-1158584 bp Feature: domain Description: GyrI-like Location: 1 1 581 22-1 1 58584 bp Feature: gene Location: 1159270-1160637 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1159735-1160374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 59735-1 1 60374 bp Feature: gene Location: 1161239-1163965 bp Feature: domain Description: VgrG Location: 1161242-1163102 bp Feature: domain Description: VgrG Location: 1 1 61 242-1 1 631 02 bp Feature: domain Description: DUF2345 Location: 1163216-1163663 bp Feature: domain Description: DUF2345 Location: 1 1 6321 6-1 1 63663 bp Feature: gene Location: 1163978-1166104 bp Feature: domain Description: lambda_lys_like Location: 1165631-1166087 bp Feature: domain Description: lambda_lys_like Location: 1 1 65631 -1 1 66087 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0305 (TIGR00908), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons, VgrG (COG3501), DUF2345 (pfam10106), lambda_lys_like

Seq: CADFGE010000004.1 TPA_asm: Paraburkholderia fungorum strain LMG 16225 genome assembly, contig: B_fungorum_BCC0770_ERS784892_SC_contig000004, whole genome shotgun sequence (570189 bp)
Overview 1 RT 1: 26971-35772 bp Neighborhood of RT #1 [26971, 35774] LpxC DciA RVT_N RVT-GII GIIM HNHc PRK12904 argJ Feature: gene Location: 26971-27888 bp Feature: domain Description: LpxC Location: 26974-27853 bp Feature: domain Description: LpxC Location: 2 6974-2 7853 bp Feature: gene Location: 27969-28454 bp Feature: domain Description: DciA Location: 28038-28293 bp Feature: domain Description: DciA Location: 2 8038-2 82 93 bp Feature: gene Location: 29670-31370 bp Feature: RT Description: RVT_N Location: 29727-29964 bp Feature: RT Description: RVT_N Location: 2 972 7-2 9964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30015-30663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30015-30663 bp Feature: domain Description: GIIM Note: maturase Location: 30717-30948 bp Feature: domain Description: GIIM Note: maturase Location: 30717-30948 bp Feature: domain Description: HNHc Note: nucleases Location: 31164-31332 bp Feature: domain Description: HNHc Note: nucleases Location: 31164-31332 bp Feature: gene Location: 31571-34381 bp Feature: domain Description: PRK12904 Location: 31583-34373 bp Feature: domain Description: PRK12 904 Location: 31583-34373 bp Feature: gene Location: 34431-35774 bp Feature: domain Description: argJ Location: 34572-35772 bp Feature: domain Description: argJ Location: 34572 -35772 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LpxC (pfam03331), DciA, RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK12904 (preprotein translocase subunit SecA; Reviewed), argJ (PRK05388)

Seq: CADFGE010000007.1 TPA_asm: Paraburkholderia fungorum strain LMG 16225 genome assembly, contig: B_fungorum_BCC0770_ERS784892_SC_contig000007, whole genome shotgun sequence (445510 bp)
Overview 1 RT 1: 388488-394609 bp Neighborhood of RT #1 [388488, 394665] ilvH PRK05479 RVT_N RVT-GII GIIM HNHc PRK05305 PssA Feature: gene Location: 388488-388979 bp Feature: domain Description: ilvH Location: 388491-388968 bp Feature: domain Description: ilvH Location: 3 88491-3 88968 bp Feature: gene Location: 389127-390143 bp Feature: domain Description: PRK05479 Location: 389130-390111 bp Feature: domain Description: PRK05479 Location: 3 8913 0-3 90111 bp Feature: gene Location: 391414-393015 bp Feature: RT Description: RVT_N Location: 391417-391615 bp Feature: RT Description: RVT_N Location: 3 91417-3 91615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391660-392308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 91660-3 923 08 bp Feature: domain Description: GIIM Note: maturase Location: 392359-392593 bp Feature: domain Description: GIIM Note: maturase Location: 3 923 59-3 92593 bp Feature: domain Description: HNHc Note: nucleases Location: 392836-392977 bp Feature: domain Description: HNHc Note: nucleases Location: 3 9283 6-3 92977 bp Feature: gene Location: 393133-393771 bp Feature: domain Description: PRK05305 Location: 393157-393766 bp Feature: domain Description: PRK053 05 Location: 3 93 157-3 93 766 bp Feature: gene Location: 393796-394665 bp Feature: domain Description: PssA Location: 393928-394609 bp Feature: domain Description: PssA Location: 3 93 928-3 94609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05305 (phosphatidylserine decarboxylase family protein), PssA (COG1183)

Seq: CADFGE010000009.1 TPA_asm: Paraburkholderia fungorum strain LMG 16225 genome assembly, contig: B_fungorum_BCC0770_ERS784892_SC_contig000009, whole genome shotgun sequence (339718 bp)
Overview 1 RT 1: 82531-86423 bp Neighborhood of RT #1 [82531, 86464] Resolvase Recombinase Zn_ribbon_recom RVT_N RVT-GII IS5 Feature: gene Location: 82531-84249 bp Feature: domain Description: Resolvase Location: 82552-82990 bp Feature: domain Description: Resolvase Location: 82552-82990 bp Feature: domain Description: Recombinase Location: 83086-83446 bp Feature: domain Description: Recombinase Location: 83086-834 4 6 bp Feature: domain Description: Zn_ribbon_recom Location: 83491-83695 bp Feature: domain Description: Zn_ribbon_recom Location: 834 91-83695 bp Feature: gene Location: 84246-84428 bp Feature: gene Location: 84544-85311 bp Feature: RT Description: RVT_N Location: 84619-84856 bp Feature: RT Description: RVT_N Location: 84 619-84 856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84907-85285 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 907-85285 bp Feature: gene Location: 85352-85582 bp Feature: gene Location: 85868-86464 bp Feature: domain Description: IS5 Location: 86057-86423 bp Feature: domain Description: IS5 Location: 86057-864 23 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), RVT_N (pfam13655), RVT-GII, IS5 (COG3039)

Seq: CADFGE010000013.1 TPA_asm: Paraburkholderia fungorum strain LMG 16225 genome assembly, contig: B_fungorum_BCC0770_ERS784892_SC_contig000013, whole genome shotgun sequence (298564 bp)
Overview 1 RT 1: 173794-177153 bp Neighborhood of RT #1 [173794, 177194] RVT-GII GIIM STE14 Feature: gene Location: 173794-174006 bp Feature: gene Location: 174085-174297 bp Feature: gene Location: 174552-175877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174843-175506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174843-175 5 06 bp Feature: domain Description: GIIM Note: maturase Location: 175578-175791 bp Feature: domain Description: GIIM Note: maturase Location: 175 5 78-175 791 bp Feature: gene Location: 176254-176568 bp Feature: gene Location: 176535-177194 bp Feature: domain Description: STE14 Location: 176664-177153 bp Feature: domain Description: STE14 Location: 176664-17715 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), STE14 (COG2020)