myRT

myRT report for GCA_902833665.1_Paraburkholderia_phymatum_LMG_21445

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Seq: CADFGH010000001.1 TPA_asm: Paraburkholderia phymatum strain LMG 21445 genome assembly, contig: B_phymatum_BCC1607_ERS784987_SC_contig000001, whole genome shotgun sequence (704731 bp)
Overview 1 RT 1: 478239-485214 bp Neighborhood of RT #1 [478239, 485219] R_switched_YjbE PilE RVT_N RVT-GII GIIM HNHc PglL_A Wzy_C Wzy_C_2 moaC Feature: gene Location: 478239-478952 bp Feature: domain Description: R_switched_YjbE Location: 478275-478812 bp Feature: domain Description: R_switched_YjbE Location: 478275-47881 2 bp Feature: gene Location: 479103-479720 bp Feature: domain Description: PilE Location: 479208-479346 bp Feature: domain Description: PilE Location: 479208-479346 bp Feature: gene Location: 481059-482666 bp Feature: domain Description: RVT_N Location: 481062-481260 bp Feature: domain Description: RVT_N Location: 481 062-481 260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481305-481953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 305-481 953 bp Feature: domain Description: GIIM Note: maturase Location: 482004-482238 bp Feature: domain Description: GIIM Note: maturase Location: 482004-482238 bp Feature: domain Description: HNHc Note: nucleases Location: 482469-482622 bp Feature: domain Description: HNHc Note: nucleases Location: 482469-482622 bp Feature: gene Location: 482791-484581 bp Feature: domain Description: PglL_A Location: 483298-483370 bp Feature: domain Description: PglL_A Location: 483298-483370 bp Feature: domain Description: Wzy_C Location: 483412-483880 bp Feature: domain Description: Wzy_C Location: 48341 2-483880 bp Feature: domain Description: Wzy_C_2 Location: 483946-484447 bp Feature: domain Description: Wzy_C_2 Location: 483946-484447 bp Feature: gene Location: 484668-485219 bp Feature: domain Description: moaC Location: 484749-485214 bp Feature: domain Description: moaC Location: 484749-48521 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT R_switched_YjbE (TIGR03717), PilE (COG4968), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PglL_A (pfam15864), Wzy_C (pfam04932), Wzy_C_2 (pfam11846), moaC (TIGR00581)

Seq: CADFGH010000017.1 TPA_asm: Paraburkholderia phymatum strain LMG 21445 genome assembly, contig: B_phymatum_BCC1607_ERS784987_SC_contig000017, whole genome shotgun sequence (156584 bp)
Overview 1 RT 1: 50403-55479 bp 2 RT 2: 59065-64123 bp Neighborhood of RT #1 [50403, 55640] DUF5372 RVT-GII GIIM RVT-GII RVT-GII GIIM IstB_IS21 InsE Neighborhood of RT #2 [59065, 64158] Phage_int_SAM_4 INT_IntI_C DDE_Tnp_IS66 RVT_N RVT-GII GIIM COG3436 TnpB_IS66 Feature: gene Location: 50403-50735 bp Feature: gene Location: 50788-51084 bp Feature: domain Description: DUF5372 Location: 50821-51052 bp Feature: domain Description: DUF5372 Location: 5082 1-51052 bp Feature: gene Location: 51099-52112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51105-51729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51105-5172 9 bp Feature: domain Description: GIIM Note: maturase Location: 51807-52029 bp Feature: domain Description: GIIM Note: maturase Location: 51807-52 02 9 bp Feature: gene Location: 52306-52464 bp Feature: gene Location: 52646-53323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52949-53303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 949-53303 bp Feature: gene Location: 53349-53969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53355-53589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53355-53589 bp Feature: domain Description: GIIM Note: maturase Location: 53664-53883 bp Feature: domain Description: GIIM Note: maturase Location: 53664-53883 bp Feature: gene Location: 54819-55226 bp Feature: domain Description: IstB_IS21 Location: 54876-55107 bp Feature: domain Description: IstB_IS2 1 Location: 54876-55107 bp Feature: gene Location: 55161-55640 bp Feature: domain Description: InsE Location: 55227-55479 bp Feature: domain Description: InsE Location: 552 2 7-55479 bp Feature: gene Location: 59065-59943 bp Feature: domain Description: Phage_int_SAM_4 Location: 59077-59323 bp Feature: domain Description: Phage_int_SAM_4 Location: 59077-5932 3 bp Feature: domain Description: INT_IntI_C Location: 59359-59848 bp Feature: domain Description: INT_IntI_C Location: 59359-59848 bp Feature: gene Location: 60129-60737 bp Feature: domain Description: DDE_Tnp_IS66 Location: 60135-60726 bp Feature: domain Description: DDE_Tnp_IS66 Location: 60135-6072 6 bp Feature: gene Location: 60853-62670 bp Feature: domain Description: RVT_N Location: 61222-61459 bp Feature: domain Description: RVT_N Location: 612 2 2 -61459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61510-62152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61510-62 152 bp Feature: domain Description: GIIM Note: maturase Location: 62203-62437 bp Feature: domain Description: GIIM Note: maturase Location: 62 2 03-62 437 bp Feature: gene Location: 62921-63685 bp Feature: domain Description: COG3436 Location: 63200-63605 bp Feature: domain Description: COG3436 Location: 632 00-63605 bp Feature: gene Location: 63805-64158 bp Feature: domain Description: TnpB_IS66 Location: 63832-64123 bp Feature: domain Description: TnpB_IS66 Location: 63832 -6412 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), IstB_IS21 (pfam01695), InsE (COG2963), Phage_int_SAM_4 (pfam13495), INT_IntI_C (cd01193), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), COG3436 (Transposase )
TnpB_IS66 (pfam05717)

Seq: CADFGH010000030.1 TPA_asm: Paraburkholderia phymatum strain LMG 21445 genome assembly, contig: B_phymatum_BCC1607_ERS784987_SC_contig000030, whole genome shotgun sequence (68521 bp)
Overview 1 RT 1: 59817-64782 bp Neighborhood of RT #1 [59817, 64934] DUF772 RVT-GII DUF772 IS5 Abhydrolase_1 Abhydrolase_4 Feature: gene Location: 59817-60107 bp Feature: domain Description: DUF772 Location: 59973-60084 bp Feature: domain Description: DUF772 Location: 59973 -60084 bp Feature: gene Location: 60234-60446 bp Feature: gene Location: 60650-61936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60854-61544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60854-61544 bp Feature: gene Location: 61929-63053 bp Feature: domain Description: DUF772 Location: 62025-62109 bp Feature: domain Description: DUF772 Location: 62025-62109 bp Feature: domain Description: IS5 Location: 62406-63006 bp Feature: domain Description: IS5 Location: 62406-63 006 bp Feature: gene Location: 63093-64934 bp Feature: domain Description: Abhydrolase_1 Location: 63468-64011 bp Feature: domain Description: Abhydrolase_1 Location: 63 468-64011 bp Feature: domain Description: Abhydrolase_4 Location: 64506-64782 bp Feature: domain Description: Abhydrolase_4 Location: 64506-64782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF772 (pfam05598), RVT-GII, IS5 (COG3039), Abhydrolase_1 (pfam00561), Abhydrolase_4 (pfam08386)