myRT

myRT report for GCA_902833675.1_ASM90283367v1

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Seq: CADFGM010000001.1 TPA_asm: Paraburkholderia phenazinium strain BCC1874 genome assembly, contig: Burkholderia_phenazinium_BCC1874_NODE_1_length_1015775_cov_11.1704_pilon, whole genome shotgun sequence (1015775 bp)
Overview 1 RT 1: 279582-285437 bp Neighborhood of RT #1 [279582, 285442] DUF4194 DUF3375 RVT-Retrons GlxA GyrI-like Feature: gene Location: 279582-280229 bp Feature: domain Description: DUF4194 Location: 279645-280155 bp Feature: domain Description: DUF41 94 Location: 279645-2801 55 bp Feature: gene Location: 280232-281767 bp Feature: domain Description: DUF3375 Location: 280346-281759 bp Feature: domain Description: DUF3375 Location: 280346-281 759 bp Feature: gene Location: 281879-283330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 282425-283064 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 282425-283064 bp Feature: gene Location: 283656-284234 bp Feature: gene Location: 284588-285442 bp Feature: domain Description: GlxA Location: 284618-284933 bp Feature: domain Description: GlxA Location: 28461 8-284933 bp Feature: domain Description: GyrI-like Location: 284987-285437 bp Feature: domain Description: GyrI-like Location: 284987-285437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4194 (pfam13835), DUF3375 (pfam11855), RVT-Retrons, GlxA (COG4977), GyrI-like (pfam06445)

Seq: CADFGM010000004.1 TPA_asm: Paraburkholderia phenazinium strain BCC1874 genome assembly, contig: Burkholderia_phenazinium_BCC1874_NODE_4_length_430615_cov_9.32667_pilon, whole genome shotgun sequence (430615 bp)
Overview 1 RT 1: 43803-49323 bp Neighborhood of RT #1 [43803, 50321] HTH_3 RVT-GII GIIM Tra8 Tra8 Tra8 TniQ Feature: gene Location: 43803-44234 bp Feature: gene Location: 44460-44708 bp Feature: domain Description: HTH_3 Location: 44481-44589 bp Feature: domain Description: HTH_3 Location: 44481-44589 bp Feature: gene Location: 45673-47205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45946-46684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45946-46684 bp Feature: domain Description: GIIM Note: maturase Location: 46780-46957 bp Feature: domain Description: GIIM Note: maturase Location: 46780-46957 bp Feature: gene Location: 47515-48708 bp Feature: domain Description: Tra8 Location: 47569-47836 bp Feature: domain Description: Tra8 Location: 47569-47836 bp Feature: domain Description: Tra8 Location: 47932-48301 bp Feature: domain Description: Tra8 Location: 47932 -48301 bp Feature: domain Description: Tra8 Location: 48361-48694 bp Feature: domain Description: Tra8 Location: 48361-48694 bp Feature: gene Location: 48951-50321 bp Feature: domain Description: TniQ Location: 48978-49323 bp Feature: domain Description: TniQ Location: 48978-4932 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), RVT-GII, GIIM (pfam08388), Tra8 (COG2826), TniQ (pfam06527)

Seq: CADFGM010000013.1 TPA_asm: Paraburkholderia phenazinium strain BCC1874 genome assembly, contig: Burkholderia_phenazinium_BCC1874_NODE_13_length_252997_cov_10.1896_pilon, whole genome shotgun sequence (252997 bp)
Overview 1 RT 1: 49985-56133 bp Neighborhood of RT #1 [49985, 56144] PssA PRK05305 RVT_N RVT-GII GIIM HNHc PRK05479 ilvH Feature: gene Location: 49985-50854 bp Feature: domain Description: PssA Location: 50117-50798 bp Feature: domain Description: PssA Location: 50117-50798 bp Feature: gene Location: 50878-51522 bp Feature: domain Description: PRK05305 Location: 50902-51514 bp Feature: domain Description: PRK053 05 Location: 50902-51514 bp Feature: gene Location: 51645-53246 bp Feature: domain Description: RVT_N Location: 51648-51846 bp Feature: domain Description: RVT_N Location: 51648-51846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51891-52539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51891-5253 9 bp Feature: domain Description: GIIM Note: maturase Location: 52590-52824 bp Feature: domain Description: GIIM Note: maturase Location: 52590-52824 bp Feature: domain Description: HNHc Note: nucleases Location: 53067-53208 bp Feature: domain Description: HNHc Note: nucleases Location: 53 067-53 208 bp Feature: gene Location: 54513-55529 bp Feature: domain Description: PRK05479 Location: 54516-55497 bp Feature: domain Description: PRK05479 Location: 54516-55497 bp Feature: gene Location: 55653-56144 bp Feature: domain Description: ilvH Location: 55656-56133 bp Feature: domain Description: ilvH Location: 55656-5613 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK05479 (ketol-acid reductoisomerase; Provisional), ilvH (PRK11895)

Seq: CADFGM010000036.1 TPA_asm: Paraburkholderia phenazinium strain BCC1874 genome assembly, contig: Burkholderia_phenazinium_BCC1874_NODE_36_length_61791_cov_20.6914_pilon, whole genome shotgun sequence (61791 bp)
Overview 1 RT 1: 48997-54230 bp Neighborhood of RT #1 [48997, 54230] rve RVT-UG20 Feature: gene Location: 48997-50889 bp Feature: domain Description: rve Location: 49720-50098 bp Feature: domain Description: rve Location: 4 9720-50098 bp Feature: gene Location: 50876-51520 bp Feature: gene Location: 51701-53311 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 52085-52580 bp Feature: RT Description: RVT-UG20 Note: UG20 RT Location: 52085-52580 bp Feature: gene Location: 53438-53653 bp Feature: gene Location: 53682-54230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve (pfam00665), RVT-UG20