myRT

myRT report for GCA_902833725.1_ASM90283372v1

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Seq: CADFGK010000031.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000031, whole genome shotgun sequence (61133 bp)
Overview 1 RT 1: 55666-60396 bp Neighborhood of RT #1 [55666, 60776] CtaD_CoxA CyoA Cytochrom_C RVT-GII Feature: gene Location: 55666-57669 bp Feature: domain Description: CtaD_CoxA Location: 55807-57298 bp Feature: domain Description: CtaD_CoxA Location: 55807-57298 bp Feature: gene Location: 57703-58836 bp Feature: domain Description: CyoA Location: 57877-58549 bp Feature: domain Description: CyoA Location: 57877-58549 bp Feature: domain Description: Cytochrom_C Location: 58573-58831 bp Feature: domain Description: Cytochrom_C Location: 58573-58831 bp Feature: gene Location: 59298-60776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59709-60396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59709-60396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CtaD_CoxA (TIGR02891), CyoA (TIGR01433), Cytochrom_C (pfam00034), RVT-GII

Seq: CADFGK010000035.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000035, whole genome shotgun sequence (48204 bp)
Overview 1 RT 1: 44425-47647 bp Neighborhood of RT #1 [44425, 47685] PssA PRK05305 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 44425-45300 bp Feature: domain Description: PssA Location: 44566-45244 bp Feature: domain Description: PssA Location: 44566-452 44 bp Feature: gene Location: 45313-45966 bp Feature: domain Description: PRK05305 Location: 45337-45949 bp Feature: domain Description: PRK05305 Location: 45337-45949 bp Feature: gene Location: 46084-47685 bp Feature: domain Description: RVT_N Location: 46087-46285 bp Feature: domain Description: RVT_N Location: 46087-462 85 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46330-46978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46330-46978 bp Feature: domain Description: GIIM Note: maturase Location: 47032-47263 bp Feature: domain Description: GIIM Note: maturase Location: 47032 -472 63 bp Feature: domain Description: HNHc Note: nucleases Location: 47470-47647 bp Feature: domain Description: HNHc Note: nucleases Location: 47470-47647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: CADFGK010000060.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000060, whole genome shotgun sequence (22997 bp)
Overview 1 RT 1: 628-7738 bp Neighborhood of RT #1 [628, 7932] RVT-Retrons rubredoxin rubredoxin ABC_ATPase AAA_21 Feature: gene Location: 628-1077 bp Feature: gene Location: 1236-1553 bp Feature: gene Location: 1731-3395 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1791-2433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1791-243 3 bp Feature: gene Location: 3494-4822 bp Feature: domain Description: rubredoxin Location: 3734-3788 bp Feature: domain Description: rubredoxin Location: 3 73 4-3 788 bp Feature: domain Description: rubredoxin Location: 4403-4499 bp Feature: domain Description: rubredoxin Location: 4403 -4499 bp Feature: gene Location: 4960-7932 bp Feature: domain Description: ABC_ATPase Location: 5926-6010 bp Feature: domain Description: ABC_ATPase Location: 5926-6010 bp Feature: domain Description: AAA_21 Location: 7420-7738 bp Feature: domain Description: AAA_21 Location: 7420-773 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, rubredoxin (cd00730), ABC_ATPase (pfam09818), AAA_21 (pfam13304)

Seq: CADFGK010000073.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000073, whole genome shotgun sequence (16977 bp)
Overview 1 RT 1: 10187-14409 bp Neighborhood of RT #1 [10187, 15002] RVT-GII GIIM GT4_PimA-like Glyco_tranf_GTA_type Feature: gene Location: 10187-10561 bp Feature: gene Location: 10585-10911 bp Feature: gene Location: 10989-11510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11034-11148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11034 -1114 8 bp Feature: domain Description: GIIM Note: maturase Location: 11223-11445 bp Feature: domain Description: GIIM Note: maturase Location: 11223-114 4 5 bp Feature: gene Location: 11497-11835 bp Feature: gene Location: 12330-15002 bp Feature: domain Description: GT4_PimA-like Location: 13068-13536 bp Feature: domain Description: GT4 _PimA-like Location: 13068-13536 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 13752-14409 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 13752-14 4 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), GT4_PimA-like (cd03801), Glyco_tranf_GTA_type (cl11394)

Seq: CADFGK010000075.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000075, whole genome shotgun sequence (16009 bp)
Overview 1 RT 1: 13069-15922 bp Neighborhood of RT #1 [13069, 15960] IS5 RVT_N RVT-GII GIIM Feature: gene Location: 13069-13248 bp Feature: gene Location: 13568-14170 bp Feature: domain Description: IS5 Location: 13760-14123 bp Feature: domain Description: IS5 Location: 13760-14123 bp Feature: gene Location: 14722-15960 bp Feature: domain Description: RVT_N Location: 14797-15034 bp Feature: domain Description: RVT_N Location: 14797-15 034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15085-15727 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 085 -15 727 bp Feature: domain Description: GIIM Note: maturase Location: 15778-15922 bp Feature: domain Description: GIIM Note: maturase Location: 15 778-15 922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CADFGK010000105.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000105, whole genome shotgun sequence (7235 bp)
Overview 1 RT 1: 3403-7137 bp Neighborhood of RT #1 [3403, 7137] DEDD_Tnp_IS110 Rve RVT-GII Feature: gene Location: 3403-4416 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3454-3865 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3454-386 5 bp Feature: gene Location: 4673-5089 bp Feature: domain Description: Rve Location: 4676-4760 bp Feature: domain Description: Rve Location: 46 76 -476 0 bp Feature: gene Location: 5318-6826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5744-6434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5744-6 434 bp Feature: gene Location: 6913-7137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Rve (COG3316), RVT-GII

Seq: CADFGK010000110.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000110, whole genome shotgun sequence (6754 bp)
Overview 1 RT 1: 3248-6181 bp Neighborhood of RT #1 [3248, 6225] PHA02517 RVT-GII GIIM Rve Feature: gene Location: 3248-3589 bp Feature: gene Location: 4122-4436 bp Feature: domain Description: PHA02517 Location: 4194-4329 bp Feature: domain Description: PHA02517 Location: 4194-4329 bp Feature: gene Location: 4590-5210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4596-4830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4596-4830 bp Feature: domain Description: GIIM Note: maturase Location: 4905-5124 bp Feature: domain Description: GIIM Note: maturase Location: 4905-5124 bp Feature: gene Location: 5332-5508 bp Feature: gene Location: 5524-6225 bp Feature: domain Description: Rve Location: 5566-6181 bp Feature: domain Description: Rve Location: 5566-6181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Rve (COG3316)

Seq: CADFGK010000127.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000127, whole genome shotgun sequence (4434 bp)
Overview 1 RT 1: 1661-4090 bp Neighborhood of RT #1 [1661, 4143] Hns RVT_N RVT-GII GIIM HNH Feature: gene Location: 1661-1837 bp Feature: gene Location: 2084-2425 bp Feature: domain Description: Hns Location: 2189-2315 bp Feature: domain Description: Hns Location: 218 9-2315 bp Feature: gene Location: 2440-4143 bp Feature: domain Description: RVT_N Location: 2494-2737 bp Feature: domain Description: RVT_N Location: 2494-2737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2782-3421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278 2-3421 bp Feature: domain Description: GIIM Note: maturase Location: 3472-3706 bp Feature: domain Description: GIIM Note: maturase Location: 3472-3706 bp Feature: domain Description: HNH Note: nucleases Location: 3964-4090 bp Feature: domain Description: HNH Note: nucleases Location: 3964-4090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Hns (COG2916), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: CADFGK010000128.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000128, whole genome shotgun sequence (4390 bp)
Overview 1 RT 1: 987-4238 bp Neighborhood of RT #1 [987, 4315] COG3547 RVT-GII GIIM Feature: gene Location: 987-2183 bp Feature: domain Description: COG3547 Location: 1077-2046 bp Feature: domain Description: COG3547 Location: 1077-2046 bp Feature: gene Location: 2809-3078 bp Feature: gene Location: 3071-4315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3275-3932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3275-39 32 bp Feature: domain Description: GIIM Note: maturase Location: 4019-4238 bp Feature: domain Description: GIIM Note: maturase Location: 4019 -4238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: CADFGK010000158.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000158, whole genome shotgun sequence (2833 bp)
Overview 1 RT 1: 3-2606 bp Neighborhood of RT #1 [3, 2614] RVT-GII GIIM Dimer_Tnp_Tn5 WecH Feature: gene Location: 3-791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-405 bp Feature: domain Description: GIIM Note: maturase Location: 480-708 bp Feature: domain Description: GIIM Note: maturase Location: 480-708 bp Feature: gene Location: 853-1341 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1039-1321 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 10 39-1321 bp Feature: gene Location: 1547-2614 bp Feature: domain Description: WecH Location: 1595-2606 bp Feature: domain Description: WecH Location: 1595-2606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Dimer_Tnp_Tn5 (pfam02281), WecH (COG3274)

Seq: CADFGK010000162.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000162, whole genome shotgun sequence (2647 bp)
Overview 1 RT 1: 1745-2645 bp Neighborhood of RT #1 [1745, 2644] DUF5372 RVT-GII Feature: gene Location: 1745-2020 bp Feature: gene Location: 2130-2426 bp Feature: domain Description: DUF5372 Location: 2163-2391 bp Feature: domain Description: DUF5372 Location: 2163-2391 bp Feature: gene Location: 2429-2644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441-2645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2441-2645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII

Seq: CADFGK010000165.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000165, whole genome shotgun sequence (2402 bp)
Overview 1 RT 1: 2-2135 bp Neighborhood of RT #1 [2, 2221] RVT-GII GIIM Feature: gene Location: 2-133 bp Feature: gene Location: 559-717 bp Feature: gene Location: 899-2221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202-1841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 02-1841 bp Feature: domain Description: GIIM Note: maturase Location: 1916-2135 bp Feature: domain Description: GIIM Note: maturase Location: 1916-2135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADFGK010000174.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000174, whole genome shotgun sequence (2257 bp)
Overview 1 RT 1: 1234-2236 bp Neighborhood of RT #1 [1234, 2256] DUF5372 RVT-GII Feature: gene Location: 1234-1566 bp Feature: gene Location: 1619-1906 bp Feature: domain Description: DUF5372 Location: 1637-1868 bp Feature: domain Description: DUF5372 Location: 1637-1868 bp Feature: gene Location: 1924-2256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1936-2236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1936-2236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII

Seq: CADFGK010000191.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000191, whole genome shotgun sequence (1220 bp)
Overview 1 RT 1: 2-1184 bp Neighborhood of RT #1 [2, 1189] RVT-GII GIIM Feature: gene Location: 2-1189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287-920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287-920 bp Feature: domain Description: GIIM Note: maturase Location: 995-1184 bp Feature: domain Description: GIIM Note: maturase Location: 995-1184 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CADFGK010000230.1 TPA_asm: Paraburkholderia mimosarum strain LMG 23256 genome assembly, contig: B_mimosarum_BCC1606_ERS785026_SC_contig000230, whole genome shotgun sequence (432 bp)
Overview 1 RT 1: 1-304 bp Neighborhood of RT #1 [1, 429] RVT-GII Feature: gene Location: 1-429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII